Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01017 ATGGCGGTTTTACCAAGTAGCATCTCCAGCTTGGAATTGACCATATCTGTCCCTGGCTTTGGTTCTTCGTCAACTTTTGTTCCTTCACCATCTGTGAAAGAATTGGACATCAACCAAGTACCTCTGGAAGAAGATTGGATGGCACCAAACGTGGAGGACGAAGATGAAAGCAGCAATGGAGACCCTCCTCGCAAGAAACTCCGTCTCACAAAGGACCAGTCTCGTCTCCTTGAAGAAAACTTCAAACAAAACCACACTTTGAACCCAAAGCAGAAAGAGACTTTGGCAATGAAGCTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACCTGAAGAGGTGGTTCGGAACACTGACGGAGCAGAACCGAAGGCTTCAGAAGGAAGTTGAGGAACTGAGGGCAATGAAGGTGGGTCCACCAACCGTTATATCGCCTCACTACTCATACCCTCTTCCAGCTTCAACCCTAACCATGTGTCCGCGCTGTGAGCGCGTCACTACCACCACTGTTGTCGCTACCACCACCATTGCAGACACTGTCCTGCCGTCTGCGACTTGTTGA 615 0.5057 MAVLPSSISSLELTISVPGFGSSSTFVPSPSVKELDINQVPLEEDWMAPNVEDEDESSNGDPPRKKLRLTKDQSRLLEENFKQNHTLNPKQKETLAMKLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTEQNRRLQKEVEELRAMKVGPPTVISPHYSYPLPASTLTMCPRCERVTTTTVVATTTIADTVLPSATC 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01017 204 CDD homeodomain 63 121 IPR001356 GO:0003677
Cca01g01017 204 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Cca01g01017 204 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Cca01g01017 204 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Cca01g01017 204 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Cca01g01017 204 SMART HOX_1 62 124 IPR001356 GO:0003677
Cca01g01017 204 PANTHER - 2 191 - -
Cca01g01017 204 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Cca01g01017 204 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Cca01g01017 204 Gene3D - 56 127 - -
Cca01g01017 204 Coils Coil 133 153 - -
Cca01g01017 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01017 Cca-Chr1 14891535 14895544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01017 32 184 Homeobox Transcription Factor Family AT1G70920 65.409 1.81e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca01g01017 Homeodomain 5.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01017 K09338 - gmx:100775341 327.791