Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01015 ATGAGTGACTCAAAATTGGAAGAAGGTGGAATAAAGTCGGAGAGGAATTCTAACTTTCTTGGTTCTAATGAGGTAGTTCAAGTGATACAAAAGGTAATAGCAGAGGTTATAGGTACATATTTCGTGGTATTTGCAGGGTGTTGCTCTGTGGTTCTGAATAATGCAGAAGAGACTAAAGGGACAATAACGTTTCCTGGAGTTTGCGTGGTGTGGGGTTTGATAGTAATGATCATGGTTTACTCAGTTGGTCATGTCTCTGGTGCTCATTTCAACCCAGCAGTCACTCTCAGCTTTGCTTTATATCGCCATTTCCCTTTGAAACTCGTGCCTCTATATTTTATTGCTCAAGTACTAGGATCTTTCCTTGCTAGTGGTACATTGTACCTTCTCTTTCATATAGATGATAAATCTTATTTTGGAACAAGACCTGCAGGACCTCATTCTCAATCTCTTGTTTTTGAGATACTCACATCCTTTCTCTTGATGTTTGTTGTCTCTGCAGTTGCCACTGACAATAGAGCGATTGGAAAATTCGCAGGAATAGCTGTTGGTATGACAATCATTGTAGACGTCTTCATTGCTGGACCTGTGTCAGGGGCATCTATGAATCCAGCAAGAAGCCTTGGACCTGCTTTAGTGATGCACATATACACTGGATTTTGGATTTACATGGTTGGACCATTTGTTGGTGCAATAGTGGGTGCCTCAGTCTACAACTTGATTAGATTTACAGAGAAACCACTTAGAGAACTTGGCTCAGAATCGATTAGATTTGCAACTAGATCAAATTCCCCTTAG 798 0.406 MSDSKLEEGGIKSERNSNFLGSNEVVQVIQKVIAEVIGTYFVVFAGCCSVVLNNAEETKGTITFPGVCVVWGLIVMIMVYSVGHVSGAHFNPAVTLSFALYRHFPLKLVPLYFIAQVLGSFLASGTLYLLFHIDDKSYFGTRPAGPHSQSLVFEILTSFLLMFVVSAVATDNRAIGKFAGIAVGMTIIVDVFIAGPVSGASMNPARSLGPALVMHIYTGFWIYMVGPFVGAIVGASVYNLIRFTEKPLRELGSESIRFATRSNSP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01015 265 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Cca01g01015 265 PANTHER AQUAPORIN NIP2-1 9 260 IPR034294 -
Cca01g01015 265 Gene3D Glycerol uptake facilitator protein. 2 254 IPR023271 -
Cca01g01015 265 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 TIGRFAM MIP: MIP family channel proteins 34 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 Pfam Major intrinsic protein 26 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 SUPERFAMILY Aquaporin-like 27 249 IPR023271 -
Cca01g01015 265 CDD MIP 30 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01015 265 PANTHER AQUAPORIN NIP4-1 9 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01015 Cca-Chr1 14796811 14799035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01015 4 251 Major Intrinsic Protein MIP AT5G37820 60.159 2.42e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01015 K09874 - gmx:100819179 400.979