Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01009 ATGGAAGCTCGTGGAGAAGGGTCCATGTCTTACTATAACGTTCTTGGTGTTAGTTCGGATTCTGATGTGGAAGAGATAAAACGTGCTTATAGGAAACTTGCTTTGCAATGGCATCCCGATAGGTGGACAAGAACTCCTTCTTTGTTGGCTGAGGCCAAACGCAAATTCCAGCAAATTCAAGAAGCTTATTCAGTGTTGTCTGACCATAAGAAAAGGACTATCTATGATGCGGGCTTGTATGATCCTCAAGAGGAAGAGGATGAGGGCTTTTCTGATTTTGTGGAAGAAATGTTGTCTCTTATGGCTCAAGTGAGGACAGAGGTAGTGCTTCTTAACAAAATCTCTAGTGAAAGAAATTGGATGGTACCAAATCTTATTTAA 381 0.4121 MEARGEGSMSYYNVLGVSSDSDVEEIKRAYRKLALQWHPDRWTRTPSLLAEAKRKFQQIQEAYSVLSDHKKRTIYDAGLYDPQEEEDEGFSDFVEEMLSLMAQVRTEVVLLNKISSERNWMVPNLI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01009 126 PANTHER PUTATIVE, EXPRESSED-RELATED 3 107 - -
Cca01g01009 126 CDD DnaJ 11 68 IPR001623 -
Cca01g01009 126 Pfam DnaJ domain 11 76 IPR001623 -
Cca01g01009 126 ProSiteProfiles dnaJ domain profile. 10 79 IPR001623 -
Cca01g01009 126 SUPERFAMILY Chaperone J-domain 8 82 IPR036869 -
Cca01g01009 126 SMART dnaj_3 9 71 IPR001623 -
Cca01g01009 126 ProSitePatterns Nt-dnaJ domain signature. 56 75 IPR018253 -
Cca01g01009 126 PRINTS DnaJ domain signature 12 30 IPR001623 -
Cca01g01009 126 PRINTS DnaJ domain signature 30 45 IPR001623 -
Cca01g01009 126 PRINTS DnaJ domain signature 51 71 IPR001623 -
Cca01g01009 126 Gene3D DnaJ domain 2 100 IPR036869 -
Cca01g01009 126 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01009 Cca-Chr1 14688034 14689876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01009 10 77 C2H2 Transcription Factor Family AT1G74250 47.826 4.18e-14 65.9