Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01004 ATGATTTCAAAGATGCCTTCTCATGAGTTATCCCAGCCGCTGGCTGAAGAAATTAGTCAGGTTCTTGGCAAATCTGTGAATGGATTGTACAAACAACATAGCTGTCCGGAAAATTTATCAGAACTAGACAGCATTCCTGAAAACAATGGGCAGAAAAGTTGCAGCACACATCGGGCCGGATCTCGCTTGGAAAGAGCAAGGAGCATCCCTGCTTCTTCGGAAGTTTCCTTAATGAATGCCACTGATCCTGAGAGTCAAGAAATTTCTGAGACAAAGAATCTACCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTCCTCTGCCCTATATCCTTGGAGCTAATGAGGGATCCTGTTATTGTGGCGACCGGTCAGACATATGAAAGATCCTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACGCCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAACACAACATTGAGCAGCCAACAGGACTAACTAATGGAAAACTAAAGAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATTGAAGCTCTAGTCCGGAAGCTCTCCAGCCGGTCTGTTGAGGAGCGTAGAGCAGCTGTTACTGAAATTCGATCTCTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAGGCTGGAGCAATTCCAGTTCTAGTCAACCTTTTAACTTCAGAAGATGTATTGACGCAAGACAATGCAGTTACTTCAATTCTCAACCTTTCCATATATGAAAATAACAAGGGACTCATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTTCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGGGCTTCAGGAGCTATACCCGCTTTGGTAGAATTGCTCCAAAATGGGAGCCCAAGAGGAAAGAAGGATGCAGCAACAGCTTTGTTCAATTTATGCATTTATCAAGGGAACAAGGGAAGGGCCATTAGGGCAGGGATCATCACAGCTTTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGATGAGGCCCTAACAATAATGTCAGTTCTAGCCAGCCACCAAGAGGCAAAAGTTGCTATTGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACAGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTACTTGCTTTGTGCAAGAGGGATGCCGACAATCTAGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTCACTGAACTTGCGCGAAATGGTACAGAGAGGGCCAAAAGGAAGGCGACTTCATTATTGGAGCATCTTCGGAAGTTGCAGCAACTTTGA 1455 0.4316 MISKMPSHELSQPLAEEISQVLGKSVNGLYKQHSCPENLSELDSIPENNGQKSCSTHRAGSRLERARSIPASSEVSLMNATDPESQEISETKNLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLTELARNGTERAKRKATSLLEHLRKLQQL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01004 484 MobiDBLite consensus disorder prediction 72 88 - -
Cca01g01004 484 SUPERFAMILY ARM repeat 204 478 IPR016024 -
Cca01g01004 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Cca01g01004 484 Gene3D - 384 483 IPR011989 -
Cca01g01004 484 Gene3D - 186 284 IPR011989 -
Cca01g01004 484 CDD RING-Ubox_PUB 109 151 IPR045210 -
Cca01g01004 484 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 39 481 - -
Cca01g01004 484 Pfam Armadillo/beta-catenin-like repeat 317 355 IPR000225 GO:0005515
Cca01g01004 484 Pfam Armadillo/beta-catenin-like repeat 235 273 IPR000225 GO:0005515
Cca01g01004 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 410 IPR000225 GO:0005515
Cca01g01004 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 286 328 IPR000225 GO:0005515
Cca01g01004 484 SUPERFAMILY RING/U-box 104 179 - -
Cca01g01004 484 ProSiteProfiles U-box domain profile. 104 178 IPR003613 GO:0004842|GO:0016567
Cca01g01004 484 Gene3D - 285 383 IPR011989 -
Cca01g01004 484 SMART arm_5 398 438 IPR000225 GO:0005515
Cca01g01004 484 SMART arm_5 440 480 IPR000225 GO:0005515
Cca01g01004 484 SMART arm_5 234 274 IPR000225 GO:0005515
Cca01g01004 484 SMART arm_5 357 397 IPR000225 GO:0005515
Cca01g01004 484 SMART arm_5 316 356 IPR000225 GO:0005515
Cca01g01004 484 SMART arm_5 275 315 IPR000225 GO:0005515
Cca01g01004 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 203 245 IPR000225 GO:0005515
Cca01g01004 484 Pfam U-box domain 105 176 IPR003613 GO:0004842|GO:0016567
Cca01g01004 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Cca01g01004 484 PANTHER U BOX DOMAIN-CONTAINING 39 481 - -
Cca01g01004 484 Coils Coil 464 484 - -
Cca01g01004 484 MobiDBLite consensus disorder prediction 41 89 - -
Cca01g01004 484 MobiDBLite consensus disorder prediction 41 57 - -
Cca01g01004 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Cca01g01004 484 SMART Ubox_2 108 171 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01004 Cca-Chr1 14592909 14596090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01004 92 483 U-box Gene Family AT1G23030 75.573 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01004 - - gmx:100815448 875.544