Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01002 ATGAGGAAACCTAGTTGTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCGTAGATTATATAAATAAACACGGCGAGGTTTGTTGGCGCACACTCCCTCAGGCTGCAGGTTTACTTCGCTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGTCCAGATCTAAAAAGGGGAAACTTTTCCGAAGATGAAGAAGATCTCATCGTCAAGCTTCATGCCCTTCTAGGCAACAGGTGGTCACTAATAGCTGGTAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCATATAAGAAGAAAGCTAATTAGCAAGGGAATTGACCCAAACAATCATCGATTAAAACACTCAATCCCAAACCTTGAGAATCCACCCATGTCTGATGATAGTTCAAAACCCTGTGGCACGAAGGACATTAGCAAGAACGAGACAAGTAAATCACCTCATGTTTATAACTCTGGTGAAGTCTCAGATGCTGCAAGTGGCGAGGCTGAGTCATCATGTGCATTGCCAGACTTAAACCTTGACCTCTCTATTGCCATTCCTTCAGCTTCACCCACCGTTTCTGAAAACAATATTGCACCATTTCATGAATCTAATTCGTCAAGGAAAATGCACTTTGAATCTCCTTCAACGCTTCTTCTATTTCAGTAA 693 0.4156 MRKPSCDIKDLNKGAWSKQEDQKLVDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFSEDEEDLIVKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLKHSIPNLENPPMSDDSSKPCGTKDISKNETSKSPHVYNSGEVSDAASGEAESSCALPDLNLDLSIAIPSASPTVSENNIAPFHESNSSRKMHFESPSTLLLFQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01002 230 MobiDBLite consensus disorder prediction 150 167 - -
Cca01g01002 230 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Cca01g01002 230 MobiDBLite consensus disorder prediction 122 171 - -
Cca01g01002 230 Gene3D - 67 136 - -
Cca01g01002 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 211 - -
Cca01g01002 230 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca01g01002 230 SMART sant 65 113 IPR001005 -
Cca01g01002 230 SMART sant 12 62 IPR001005 -
Cca01g01002 230 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca01g01002 230 CDD SANT 68 111 IPR001005 -
Cca01g01002 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Cca01g01002 230 Gene3D - 5 66 - -
Cca01g01002 230 CDD SANT 15 60 IPR001005 -
Cca01g01002 230 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Cca01g01002 230 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca01g01002 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Cca01g01002 230 PANTHER - 2 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01002 Cca-Chr1 14527798 14529785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01002 2 195 MYB Transcription Factor Family AT4G38620 54.717 3.59e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01002 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01002 K09422 - gmx:100814923 408.297