Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01001 ATGGTTTTATGTAGGCATAAACAACCTTCAGTTCCAATTCCAACTCTCCTCATCACCTTATTCTTTCTTTCCATTTTCTTAGTAGATTGCCAAATCCTTGAAACTCCATCACCACCATCCGATTCACTCCCATTAATCCCTGACATTTTGAACTTCTTAGACCAGAGGGTGGTTCAGGTTATCCCAATTATTCAAACCTTCAAGAACACTATAACCTTAGACCCTTTGGGAGTAACAACAACATGGGTTGGTCCAAACGTATGCAACTACACAGGCTTCTATTGTGGCAACCCACCCGATAACCTCACCGCCACAACCGTTTCCTCAATCGATTTCAATGGCTTTCAAATCACAGCTCCAACTCTCGACGGCTTCATCGACCAACTCCCAGACTTGGCCCTCTTCCATGCAAACACCAACAATTTCTCCGGCACCATTTCTCCAAAAATAGCGAATCTCAAGTTTCTATACGAACTTGACCTAAGTAACAATTTTTTCTCCGGGGTATTCCCCACATCGATCCTTAAGATCCCCACGTTGTCCTTTTTGGACATTAGGTACAACTTTTTCAGCGGCACCGTGCCCCCACAAATTTTCATGCAAACATTGGACGTACTTTTCATCAACAATAACAATTTCATGCTGACGCTGCCCAACAACCTAGGAGACACCCCGGTGGTTTATCTCACGTTGGCCAACAACAAATTCACGGGCCCTATTCCTCGCAGCATTGGAAAAGCCTCGTCCACGTTGGTCGAAGTGTTGCTACTGAACAACCTTTTAACGGGTTGTCTTCCCTACGAAATTGGGTTCTTGGGAAACGTGACATTGTTCGATGCTGGTGGGAACCTCTTAACTGGGCCTATTCCGTGGTCCTTTGGGTGCTTGAAGAAAGTGGAGCAGCTGAACCTGGCTAGGAACTTTTTGTACGGACAGGTTCCGGAAGTGGTGTGTGCGTTGGGGAATTTGGCGAATCTTTCTTTGTCATATAATTATTTTACGAGAGTGGGGCCCTTGTGCAAGAAGCTGATTCAAAGGGGGGTTCTTGATGTGAGGAAGAACTGTATTTTCGGTCTTCCGGATCAGAGATCGGGGAGGGAGTGTATGGCGTTCTTTTTGATTCCGAGAACTTGTTCGCACCCTGCGTCGTTTAATATTATACCGTGTCAGATTCATCATTCGACGAAACCCTCGGAGAGAACTAGGAGGCATTTGCTTTCATATTCTGCTCTTTCTAGAAATAGAGTTATTTTGTAA 1257 0.4503 MVLCRHKQPSVPIPTLLITLFFLSIFLVDCQILETPSPPSDSLPLIPDILNFLDQRVVQVIPIIQTFKNTITLDPLGVTTTWVGPNVCNYTGFYCGNPPDNLTATTVSSIDFNGFQITAPTLDGFIDQLPDLALFHANTNNFSGTISPKIANLKFLYELDLSNNFFSGVFPTSILKIPTLSFLDIRYNFFSGTVPPQIFMQTLDVLFINNNNFMLTLPNNLGDTPVVYLTLANNKFTGPIPRSIGKASSTLVEVLLLNNLLTGCLPYEIGFLGNVTLFDAGGNLLTGPIPWSFGCLKKVEQLNLARNFLYGQVPEVVCALGNLANLSLSYNYFTRVGPLCKKLIQRGVLDVRKNCIFGLPDQRSGRECMAFFLIPRTCSHPASFNIIPCQIHHSTKPSERTRRHLLSYSALSRNRVIL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01001 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 17 414 - -
Cca01g01001 418 Gene3D Ribonuclease Inhibitor 63 222 IPR032675 -
Cca01g01001 418 PANTHER SCOPOLETIN GLUCOSYLTRANSFERASE 17 414 - -
Cca01g01001 418 Gene3D Ribonuclease Inhibitor 225 416 IPR032675 -
Cca01g01001 418 SUPERFAMILY L domain-like 69 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01001 Cca-Chr1 14483134 14484674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01001 52 375 Leucine-rich Repeat extension Gene Families AT3G24480 46.914 1.78e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01001 - - gmx:100813314 689.878