Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01000 ATGGGAACCAAATCCATCATCTTCTTCTTACTCTGCTCTTTCTTCCTCCACCTCGCGGTTACTCAAGAGGTAGCAAAATCCGAAAGCGAAGCACTGGGAGAATCAGAGAAAAGAGAAACCCTCGAAATCATCATAGGCGGTGGAGGctcccctgctccctctccgtcttcccctgcatgcccccctcccccgcccAAACCACTCAGCCGCTTGGAGAAAGCGCGTGGCGTGCTTCTCAAGTTCAAGTCACAAATCGAAGACCCCAACTGTTACACGAAGAACTGGAACGAGAACACCGACACGTGTGACTTCAAGGGGATACGATGCGCCACATATCCGGTGGATAAACAGAAAGCAGTCGCTGGACTGGACTTAAACGGCGCACGTGTGAGAGGTCAAAACGGTTGCCCGTTGCCCCTCACGGGTATCTTAGACGGCATAGAAGAGTTAACATTCTTCCACGTCAACTCCAACAACTTCACCGGAGGCGTCCCCCAAAAAATCATTGATTTCAAATATTTCTTCGAGCTGGACCTGAGTAACAACAATGTCACCGGGACGTTCCCCCTGGAAGCGCTCAAGTCCAACCTATTGGTGTTCTTGGACATCAGGTTTAACCGCCTCACCGGCCCAATCCCCTCCCAGCTCTTCAAGAACGACCTCGATGTCATCTTCGTCAACAACAACAAATTCTCCTCCTGCCTCCCTCAGAACTTCGGCTCCACCCCGGCCCGCTACCTCACCTTCGCCCACAACCAACTCACCGGCCCAATTCCCAGGAGCGTGGGCTTCGCGCCCAACCTCACCGAGGTCCTTTTCTTGGGGAACAACTTCGACGGCTGCCTCCCCTTCGAAATCGGGTACCTGAAAAAGGCCGTGGTGTTTGACGTCAGCCAAAACTCCATCACCGGCCCAATCCCCCTCTCCTTCGGCTGCTTGAAGAGCATTCAGTACCTGAACCTGGCGCACAACAAATTCTACGGCGTTGTTCCCGACAACCTTTGCCAGATCCCTTCGCTGCGGAACAACGGGAACCTGTCTTTAGCGGATAATTACTTCAAAGAGATTGGGCCCTCGTGCTGGAGTTTGATAAAGTCCAACGTTTTGGACGTGTCCAAAAACTGCATCCCGGGCCTCCCCAACCAACGCTCGCCCCAAGAATGCCATGACTTTTACTACAAAACCAAGAAGCCATGCCCCAACCCGGAATCATTCTATTACGTCCCTTGTAAATCGTACTGGGGAACACATAGCACGGATCCCCAAGCAACCGCTACACCTTCTGAACCGGTCACTTACAAGACCCTCAAACCGCACCGGTTGAGATTGTGA 1332 0.5038 MGTKSIIFFLLCSFFLHLAVTQEVAKSESEALGESEKRETLEIIIGGGGSPAPSPSSPACPPPPPKPLSRLEKARGVLLKFKSQIEDPNCYTKNWNENTDTCDFKGIRCATYPVDKQKAVAGLDLNGARVRGQNGCPLPLTGILDGIEELTFFHVNSNNFTGGVPQKIIDFKYFFELDLSNNNVTGTFPLEALKSNLLVFLDIRFNRLTGPIPSQLFKNDLDVIFVNNNKFSSCLPQNFGSTPARYLTFAHNQLTGPIPRSVGFAPNLTEVLFLGNNFDGCLPFEIGYLKKAVVFDVSQNSITGPIPLSFGCLKSIQYLNLAHNKFYGVVPDNLCQIPSLRNNGNLSLADNYFKEIGPSCWSLIKSNVLDVSKNCIPGLPNQRSPQECHDFYYKTKKPCPNPESFYYVPCKSYWGTHSTDPQATATPSEPVTYKTLKPHRLRL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01000 443 Pfam Leucine rich repeat N-terminal domain 75 109 IPR013210 -
Cca01g01000 443 PANTHER BNAC05G26270D PROTEIN 11 434 - -
Cca01g01000 443 Gene3D Ribonuclease Inhibitor 244 392 IPR032675 -
Cca01g01000 443 MobiDBLite consensus disorder prediction 44 67 - -
Cca01g01000 443 Gene3D Ribonuclease Inhibitor 71 243 IPR032675 -
Cca01g01000 443 SUPERFAMILY L domain-like 75 376 - -
Cca01g01000 443 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01000 Cca-Chr1 14462898 14464875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01000 70 399 Leucine-rich Repeat extension Gene Families AT3G24480 39.759 4.55e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01000 - - gmx:100781948 644.81