Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00991 ATGGCAACTAGCCCAAACAAAGACAACAACACAAACACAACAAGCCCAATCGAAACCCTGAGGGAACGCGCGAGCGCCCCTACGGCCACTGCAAGGTCATCAAGAAGGACTCCGCCAAGAAGTCCCGCGTCAAGGCCTTCCTCAAGTTGGTCAACTACCAGCACCCCCGACGCCCTCCACGCCAAGGATAAGAAGGTCACCGCCCTCAAGGAGACCAAGAAGCGCCTCGAGGACCGCTTCAAGACCGGCAAGAACCGGTGGTTCTTCACCAAGCTCAGAAGCACAACAAGATTTGATGGGGATTGCTCAGTTCAGGTGTATAGTGTGCAGGCTAGCATTCCAAAGGATCCAGCTGTGCTTTGGAATGCTGAATTCATTCAAGCAGAAGAGCTCTTCAAGCAGCCTTCCTCAGTTGATAATTGTTTGAGGGATAATAGGCAGGTTCCATAA 450 0.5222 MATSPNKDNNTNTTSPIETLRERASAPTATARSSRRTPPRSPASRPSSSWSTTSTPDALHAKDKKVTALKETKKRLEDRFKTGKNRWFFTKLRSTTRFDGDCSVQVYSVQASIPKDPAVLWNAEFIQAEELFKQPSSVDNCLRDNRQVP 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00991 149 MobiDBLite consensus disorder prediction 1 70 - -
Cca01g00991 149 MobiDBLite consensus disorder prediction 1 57 - -
Cca01g00991 149 Pfam Ribosomal L27e protein family 52 93 IPR001141 GO:0003735|GO:0005840|GO:0006412
Cca01g00991 149 Gene3D - 42 94 IPR038655 -
Cca01g00991 149 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 97 148 IPR019038 GO:0005634|GO:0006260|GO:0043625
Cca01g00991 149 Coils Coil 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00991 Cca-Chr1 14322985 14330935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00991 53 93 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 78.049 2.86e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00991 K03504 - gmx:100812372 104.375