Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00989 atgatATCTTCATTGGAGAAGGACCTCGAGTTGTTTCCTCATGGTGAATTCACTGAAATAGGAGAGAGAGGAGTTAACTTGAGTGGAGGTCAGAAACAAAGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTCTTAGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATATTGGAAGGTCTTGCAGAGAAGACAGTCTTACTGGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGACTCAGTTTTGGTAATTTTTCATCCTTAG 306 0.3856 MISSLEKDLELFPHGEFTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYILEGLAEKTVLLVTHQVDFLPAFDSVLVIFHP 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00989 101 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 3 98 - -
Cca01g00989 101 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 98 - -
Cca01g00989 101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 98 IPR027417 -
Cca01g00989 101 Pfam ABC transporter 18 54 IPR003439 GO:0005524
Cca01g00989 101 Gene3D - 2 100 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00989 Cca-Chr1 14308631 14309634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00989 12 98 Calmodulin-binding Proteins AT2G36910 39.080 2.45e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00989 K05666 - ccaj:109796535 186.037