Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00988 ATGGAGTCAGGTCCTCCGGCGAACGATTTGTGTTCGGTGTGCCATGCCAACTTTCACATCCCATGCCAAGCCAATTGTTCTCACTGGTTTTGCGGTAATTGCATCATGCTGGTGTGGCAGCACGGATCAGGGGCTCGCCCTTGCAAGTGCCCCCTCTGTCGCCGACCCATTACTCTCTTAGTCCCAACCGAAGACTCTCTTAGGCAGAACCATGACCCTGAAGTTGCTCAGATTCTATCCAAGATTCATGCTTATAACCGTTTCTTTGGTGGCCAACCCACCTCACTTCTTCAGAGGATGCAAGATCTCCCTTTTCTGCTGCATAGGCTGCTGCGGGAATTCTTGGACCCTCAAAGATCCCTTCCTCTTGTCATTCGTGCCCGTGTCTTTGTTGCAGTTACTTTCCTTACTCTTTCACTTCTTCCTTCCTTACCTGTTGTGTGTGTGTGGTTGCCCTAG 459 0.5076 MESGPPANDLCSVCHANFHIPCQANCSHWFCGNCIMLVWQHGSGARPCKCPLCRRPITLLVPTEDSLRQNHDPEVAQILSKIHAYNRFFGGQPTSLLQRMQDLPFLLHRLLREFLDPQRSLPLVIRARVFVAVTFLTLSLLPSLPVVCVWLP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00988 152 SUPERFAMILY RING/U-box 9 62 - -
Cca01g00988 152 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Cca01g00988 152 PANTHER BNAC07G13660D PROTEIN 6 138 - -
Cca01g00988 152 PANTHER UNCHARACTERIZED 6 138 IPR038896 GO:0061630
Cca01g00988 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Cca01g00988 152 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00988 27 133 C3H Transcription Factor Family AT1G22510 64.486 1.59e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00988 K15707 - gmx:100306204 247.669