Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00984 ATGGCTCAGGTTCAGGTTCCGCCTCAGAATGCGATGCCCGGTCCCAAtggtgctgctgccgccgccgctgctgctggtgGAAACCAGTTCGTAACGACGTCGCTTTACGTCGGAGATCTCGACCCGAACGTCACGGACTCCCAGCTCTATGATTTGTTCAACCAATTGGGCCAAGTCGTGTCGGTTAGGGTTTGCAGGGATTTGACCAGTCGGAGATCGCTCGGTTACGGTTACGTCAACTATAGCAACCCGCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCCATTCGTATTATGTATTCACATCGTGATCCCAGTATCCGTAAAAGTGGGGCGGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTTTCTACATTTGGGAACATCCTTTCATGCAAGGTAGCTACGGACTCATCTGGCCAATCCAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAGAAAGCCATAGAGAAGCTGAATGGTATGCTGCTGAATGATAAACAAGTGTATGTGGGACCCTTCCTCCGCAAGCAAGAGAGAGAAAGTGCTATTGACAAGGCAAAATTCAACAATGTTTTTGTAAAGAATCTATCAGAAACAACCACTGATGATGAATTGAAGAATGTTTTTGGTGAATTTGGAGCTATCACTAGTGCTGTAGTGATGAGGGATGGAGAAGGGAAATCTAAATGTTTTGGATTTGTGAATTTTGAGAATGCTGATGATGCTGCTAAGGCTGTTGATGCTCTCAACGGTAAAAAATTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACAGCGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGACGATAGCATCGGAGACGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCAAATGGTATAAGCCGTGGATCAGGATTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTAGCCCAACGGAAAGAAGATAGAAGAGCTAGACTTCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCGATGTATCCCCCAGGTGGTCCAGGTATTGGTCAACAGATATTTTATGGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCCGGTATGAGGCCCGGTGCGGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAAGGACAGCGTCCTGGTGGAAGGCGTGGTGGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGGCGTGTCTATCGTTATCCTCCTGGTAGGGGTATGCCTGATGTTTCTATGCCTGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCGCTGCGTGATGCATCTCTCTCCCAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTTGCTAATGCTTCTCCTGAGCAGCAGAGGACGATGCTGGGTGAGAATCTGTACCCCCTTGTGGAACAGGTAGAGCCTGATAATGCTGCCAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCACCAGAAGCGCTGAAAGCAAAGGTGGCTGAGGCTATGGATGTCCTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGCGGTGCTGCGGATCAGCTGGCTTCATTGTCACTTAATGACAACCTTGTTTCTTAA 1965 0.4636 MAQVQVPPQNAMPGPNGAAAAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKAKFNNVFVKNLSETTTDDELKNVFGEFGAITSAVVMRDGEGKSKCFGFVNFENADDAAKAVDALNGKKFDDKEWYVGKAQKKSEREHELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRGGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGMPDVSMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQVEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00984 654 CDD RRM1_I_PABPs 34 113 - -
Cca01g00984 654 Gene3D - 197 296 IPR012677 -
Cca01g00984 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 628 IPR006515 GO:0003723
Cca01g00984 654 Gene3D - 297 400 IPR012677 -
Cca01g00984 654 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676
Cca01g00984 654 CDD RRM3_I_PABPs 211 290 - -
Cca01g00984 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Cca01g00984 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Cca01g00984 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Cca01g00984 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Cca01g00984 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723
Cca01g00984 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Cca01g00984 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 193 IPR000504 GO:0003723
Cca01g00984 654 SMART poly_2 567 630 IPR002004 GO:0003723
Cca01g00984 654 Gene3D - 551 634 - -
Cca01g00984 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Cca01g00984 654 Gene3D - 122 194 IPR012677 -
Cca01g00984 654 SMART rrm1_1 122 194 IPR000504 GO:0003723
Cca01g00984 654 SMART rrm1_1 34 107 IPR000504 GO:0003723
Cca01g00984 654 SMART rrm1_1 316 388 IPR000504 GO:0003723
Cca01g00984 654 SMART rrm1_1 213 285 IPR000504 GO:0003723
Cca01g00984 654 Gene3D - 28 121 IPR012677 -
Cca01g00984 654 PANTHER POLYADENYLATE-BINDING PROTEIN 22 637 - -
Cca01g00984 654 CDD RRM4_I_PABPs 314 392 - -
Cca01g00984 654 SMART rrm2_1 213 285 IPR003954 GO:0003676
Cca01g00984 654 SMART rrm2_1 34 107 IPR003954 GO:0003676
Cca01g00984 654 SMART rrm2_1 122 194 IPR003954 GO:0003676
Cca01g00984 654 SMART rrm2_1 316 388 IPR003954 GO:0003676
Cca01g00984 654 CDD RRM2_I_PABPs 119 195 IPR045305 -
Cca01g00984 654 PANTHER RNA BINDING PROTEIN 22 637 - -
Cca01g00984 654 MobiDBLite consensus disorder prediction 478 498 - -
Cca01g00984 654 Pfam Poly-adenylate binding protein, unique domain 563 627 IPR002004 GO:0003723
Cca01g00984 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Cca01g00984 654 SUPERFAMILY RNA-binding domain, RBD 212 396 IPR035979 GO:0003676
Cca01g00984 654 SUPERFAMILY PABC (PABP) domain 496 648 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00984 Cca-Chr1 14226973 14233373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00984 32 653 Eukaryotic Initiation Factors Gene Family AT1G49760 75.987 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00984 K13126 - gmx:100813735 1155.2