Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00981 ATGACGCAGGCACAAGAGGCGCTGGAGCAGGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCCGTGACGTACTGCAAGCGAGGGCGCGGTCTGATAAAGATCAACGGCTGCCCGATCGAGCTGGTGGAGCCGGAGATCCTCCGGTTCAAGGCCTTCGAGCCGATCCTCCTCCTCGGCAAGAGCCGGTTCGCGGGCGTGGACATGCGAATCCGCGTGAAGGGCGGCGGCCACACCTCGCAGATTTACGCCATCCGGCAGAGCATCGCGAAGGCCCTGGTGGCCTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAGATCAAGGACATCCTCGTCAGGTACGACCGCACCTTGCTCGTCGCCGATCCCCGCCGCTGCGAGCCCAAGAAGTTCGGCGGTCGCGGCGCCCGCGCCAGGTTCCAGAAGTCTTACCGTTAG 444 0.6374 MTQAQEALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00981 147 Gene3D - 2 147 IPR014721 -
Cca01g00981 147 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 147 IPR020568 -
Cca01g00981 147 Pfam Ribosomal protein S9/S16 15 147 IPR000754 GO:0003735|GO:0005840|GO:0006412
Cca01g00981 147 PANTHER RIBOSOMAL PROTEIN S9 5 147 IPR000754 GO:0003735|GO:0005840|GO:0006412
Cca01g00981 147 ProSitePatterns Ribosomal protein S9 signature. 75 93 IPR020574 GO:0003735|GO:0005840|GO:0006412
Cca01g00981 147 PANTHER - 5 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00981 Cca-Chr1 14193400 14193843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00981 4 147 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 88.194 2.33e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00981 K02960 - gmx:100812117 284.263