Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00979 ATGCTCAGAGCTTTGGCTGGAATGCTGGTGAATCTAATCAACCAAGTCAATGATGAAGGCCTGAAACTAGAACATGGGTTGTCTTCTTCATTTAATGCTAGAATCGAGGATGGTCTTGTGTTTGAAGAAAGACAATATGCACCGAATAATATGATTTTTCCTGTTAGTTCAAATGCTAATCTACATGGCAATCAATCTAGAGTTCACCCTTCCTTTTTGCAAGGTTCCAGTTCTAATCATTTTAGCCAAAATTATAGTCTAGATATGGGGCACATTGCTGACTCTTCTGATCGTGGGAAGGGCAAAGAAGCTGGCGTTAATTGGGGTCCTTCTAGTAAGAGAAAGGCTCTTCAAGGTAATTCTAAGCAATTGTGCACTGGAGCAAGCTCAAGCATTCTTATACAATCTGAAAATGGTTGTTGGCCAACTAATCATTTTGAGCTTAATGCTTCTAGCATCTTAAGTGATTATACACCTTTAGAGGATATTCTTGTTACTACTCCTCCCTTATTGCAGAACTCAAGAAATGAAATGAGACAAGAAGTTTTCAATGCATTTCCTTTGATAAGTTTGCATACACCATGTGGTAATGTGAACAATTCTGGAGGTGCACCTTCTACTTCTTGGATTAGATCTAATTCAAATGTCCACTCATCACCTAACCCTAGCTGGATATTTAATCATGAAGTCCCAACAGAAAATATGCAGAATATATTAGAGTTCAATCCTTGGTCCCTTTTTCCATCAATTAGCTCTACATTTGGTGTTCATAATGGTCATTCTACCCCATCTCCTTCTGATCCTACTTTCTTTAACAATTGA 822 0.3796 MLRALAGMLVNLINQVNDEGLKLEHGLSSSFNARIEDGLVFEERQYAPNNMIFPVSSNANLHGNQSRVHPSFLQGSSSNHFSQNYSLDMGHIADSSDRGKGKEAGVNWGPSSKRKALQGNSKQLCTGASSSILIQSENGCWPTNHFELNASSILSDYTPLEDILVTTPPLLQNSRNEMRQEVFNAFPLISLHTPCGNVNNSGGAPSTSWIRSNSNVHSSPNPSWIFNHEVPTENMQNILEFNPWSLFPSISSTFGVHNGHSTPSPSDPTFFNN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00979 273 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 42 191 - -
Cca01g00979 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 42 191 IPR045191 GO:0061630
Cca01g00979 273 MobiDBLite consensus disorder prediction 92 120 - -
Cca01g00979 273 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 191 271 - -
Cca01g00979 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 191 271 IPR045191 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00979 14 159 C3H Transcription Factor Family AT2G15530 29.310 7.22e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00979 - K19041 gmx:100820322 241.506