Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00978 ATGGCCTTAGCCTTAGGAAATCAAGGTCCACATGATATAACCTTCTTGTGGGAAGACCATTCATGGGATCCCACCAATTCTGATAACTCAAGTGAAAGTAAAGAGAAGGCCAAGCCACTAAACCAGCAGAAAGAAGAAAAAGATGAAACTCTCGTGAATAAGAAGCGAAATCAAGTCCAGCGTAGTATTACTAGTGGTGAAGGTAAAGATGAAAAGTGTCAATCTGATCATGAAGTGCATATATGGACTGAGAGAGAAAGGAGGAAGAAAATGAGGAACATGTTTGCTAATCTTCATGCTTTGCTTCCGCATATTCCTTCTAAGGCAGATAAATCAACCGTTGTGGATGAAGCAGTGAGCTACATAAAAAATCTACAGCAAACCCTGGAAAAGCTAGAGAAACAGAAACAAGAAAGGGTCCAATATGTCTCCACTTTTGGGTGTGACTCATCTATGTTTGTTACTCATCAAGGATCTTCTAACAATCCCAATGCAATGATGGGAACTTCAAACAGTGCACTTTCATTCCCTGGGCAACAACAACCAATAGCTTTTGAAAAAACGTGGGCTGCTTCAAATATTGTCCTGAACATTTGTGGAGATGAGGCCCAATTCACCATTTGCGCGGCCCGTAAGCCAGGCCTTTTAACCTCCATTGCTTTTGTGCTAGACAAGTACAAAATAGAGGTCATATGTGCCAATATTTCGAGCATTGGAAATGGAAATGGATGCATGATTCAAGCCCATGGAAAACGATCTTCAAATGAGTTCCTAGATGCAAATTCAGTGGAGGAAATTTATAAGCAAGTGGCAGGAGAGATTATGCTATGGATCGCATAA 840 0.4083 MALALGNQGPHDITFLWEDHSWDPTNSDNSSESKEKAKPLNQQKEEKDETLVNKKRNQVQRSITSGEGKDEKCQSDHEVHIWTERERRKKMRNMFANLHALLPHIPSKADKSTVVDEAVSYIKNLQQTLEKLEKQKQERVQYVSTFGCDSSMFVTHQGSSNNPNAMMGTSNSALSFPGQQQPIAFEKTWAASNIVLNICGDEAQFTICAARKPGLLTSIAFVLDKYKIEVICANISSIGNGNGCMIQAHGKRSSNEFLDANSVEEIYKQVAGEIMLWIA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00978 279 Pfam Helix-loop-helix DNA-binding domain 80 126 IPR011598 GO:0046983
Cca01g00978 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 125 IPR011598 GO:0046983
Cca01g00978 279 SMART finulus 83 131 IPR011598 GO:0046983
Cca01g00978 279 Coils Coil 115 142 - -
Cca01g00978 279 MobiDBLite consensus disorder prediction 1 73 - -
Cca01g00978 279 Gene3D - 73 145 IPR036638 GO:0046983
Cca01g00978 279 CDD bHLH_AtbHLH_like 80 133 IPR045239 -
Cca01g00978 279 MobiDBLite consensus disorder prediction 29 55 - -
Cca01g00978 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 138 IPR036638 GO:0046983
Cca01g00978 279 PANTHER TRANSCRIPTION FACTOR BHLH95 15 277 - -
Cca01g00978 279 PANTHER - 15 277 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00978 Cca-Chr1 14127885 14130288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00978 18 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.206 1.94e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g00978 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00978 - - ccaj:109816136 556.214