Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00977 ATGGACTTCTTATTGGGAGATAATTCATCGAGTCCCTCTAATTGTAATAACTCAAGTGAAAGCAAAGAGAACATGAACTCACCAAACCAAACAAAGGAAGAAGGTGAACTCCTTTTGAATAAGAAGCGAAATCGAGAAATCATTGATGAAAATGAGAAGAAGAGTATTACTAGTGGTGAAGGAACAAATGGAAAGTATCTAGATTCTGACCATGAAATGCATCTATCAATTGAGAGAGAAAGGAGGAAGAAAATGAATGACATGTATTCTAGTCTTCAAGCTTTGCTTCCACCACGTCCTTCTAAGGCGGATAAATCAACCATTGTGGATGAAGCAGTGAACTACATAAAAGATTTAGAGCAAACCCGCGAAAAGCTTGAGAAACAGAAACAAGAAAAGTCACAATCTGCGTCTGCTCTCAAACAAATTATGGCAACTTCTAGTTCAAACGCGCTTCCTGTCCCTGAGAAGCAGCAAGTAGCTTTCGATAGAACATGGGCCGCTTCGAATATGGTCATGAACATTTCTGGAGATGAGGCCCAAATCTCCATCTGCACGGCCCATAAGCCTGGCCTCATGACCCACATCGCTTCTGTGCTGGAGAATCACAACATTGATGTCATATCTGCTACTATCTCTGCCAATGGTAATGGAAAAACATCCATGATCCAAGTTCATGGAAAACAAGCTTCGGGTGCAAATTCAGTGGAGGAAACTTACAAGCAAGTGGCTGAAGAGATTATGCCATGGATCGCTTAA 759 0.4124 MDFLLGDNSSSPSNCNNSSESKENMNSPNQTKEEGELLLNKKRNREIIDENEKKSITSGEGTNGKYLDSDHEMHLSIERERRKKMNDMYSSLQALLPPRPSKADKSTIVDEAVNYIKDLEQTREKLEKQKQEKSQSASALKQIMATSSSNALPVPEKQQVAFDRTWAASNMVMNISGDEAQISICTAHKPGLMTHIASVLENHNIDVISATISANGNGKTSMIQVHGKQASGANSVEETYKQVAEEIMPWIA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00977 252 MobiDBLite consensus disorder prediction 1 72 - -
Cca01g00977 252 Pfam Helix-loop-helix DNA-binding domain 72 120 IPR011598 GO:0046983
Cca01g00977 252 CDD bHLH_AtbHLH_like 74 127 IPR045239 -
Cca01g00977 252 Gene3D - 64 149 IPR036638 GO:0046983
Cca01g00977 252 Coils Coil 109 143 - -
Cca01g00977 252 ProSiteProfiles ACT domain profile. 181 252 IPR002912 -
Cca01g00977 252 SUPERFAMILY ACT-like 178 243 IPR045865 -
Cca01g00977 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 119 IPR011598 GO:0046983
Cca01g00977 252 MobiDBLite consensus disorder prediction 35 56 - -
Cca01g00977 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
Cca01g00977 252 PANTHER - 11 250 IPR044278 GO:0003700|GO:0006355|GO:0009960
Cca01g00977 252 SMART finulus 75 125 IPR011598 GO:0046983
Cca01g00977 252 CDD ACT_UUR-ACR-like 181 217 - -
Cca01g00977 252 PANTHER TRANSCRIPTION FACTOR BHLH95 11 250 - -
Cca01g00977 252 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00977 Cca-Chr1 14099549 14105301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00977 70 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.021 1.33e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g00977 HLH 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00977 - - ccaj:109816148 419.083