Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00975 ATGCCCGGGAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGGTGCCCAATCTCGCTCGAACTCATGCGAGACCCCGTCACGGTCTGCACCGGTCAAACCTATGACCGAGCCAGCATCGAGTCATGGGTTAGCACCGGGAACACAACGTGCCCGGTCACACGAGCCACTCTCACCGACTTCACCCTAATCCCTAACCACACCCTACGCCGTCTTATCCAAGAGTGGTGCGTCGATAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCAGCCTTGGTTCGTTCCCTTCTCAACCAAACATCCTCCGTTTCCGCTCCCGCAAACCTTCGCCTCAACTCGCTCCGTCGACTCAGACAACTCGCTCGCGACTCCGACAAGAACCGCTCCCTCATTGCCTCGGCCTCGCACAACGTCCGCCAGATCCTACTCTCCATCGTTTTCGACGCCGCCGCCGACGACTTGCGCCACGAGTCGCTCGCGCTACTCGTCATGTTTCCACTCGCCGAGTCCGAATGCGCCGCGCTCGCCTCCGACTCGGAGAAGATTAACTACCTCTCGCGGCTGCTGTCTCACAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGCTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTCCGCGCGCAGGTCAGCAATGTCGACGAAATCTACGACGGAGTCGTGGATTTGCTCCGGAATCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGTCTTGTGAAGCAGACGCGCCACAAGGCGGTGGCCGCCGCCGCGCCGGCGGTGCTGGTCGACCGCCTCGCGGACTTTGAAAAATGCGACGCGGAGAGGGCGCTGGCGACGGTGGAGCTCCTCTGCCGGATTCCGGAGGGATGCGCGGCGTTCGCCGGCCACGCGCTGACGGTGCCGATGCTGGTGAAGATTATTCTGAAGATATCGGACCGCGCGACGGAGTACGCCGCCGGAGCGCTGTTGTCGCTGTGCTCCGAATCGGAGCGGTGCCAGCGGGAGGCGGTGGCGGCGGGGGTGCTGACTCAGCTTCTGCTTCTGGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAATTTCTGACGATTTTGGATGCAGCCAGGTCGTTGTGGTTCCTTTTTGA 1251 0.6163 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVSTGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVDNRAFGVERIPTPKQPADPALVRSLLNQTSSVSAPANLRLNSLRRLRQLARDSDKNRSLIASASHNVRQILLSIVFDAAADDLRHESLALLVMFPLAESECAALASDSEKINYLSRLLSHNSFDVRVNSAALIEIVVAGTHSPELRAQVSNVDEIYDGVVDLLRNPISHPRALKIGIKALFALCLVKQTRHKAVAAAAPAVLVDRLADFEKCDAERALATVELLCRIPEGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGISDDFGCSQVVVVPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00975 416 Gene3D - 93 401 IPR011989 -
Cca01g00975 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Cca01g00975 416 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 412 - -
Cca01g00975 416 CDD RING-Ubox_PUB 18 59 IPR045210 -
Cca01g00975 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Cca01g00975 416 SUPERFAMILY RING/U-box 12 90 - -
Cca01g00975 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Cca01g00975 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Cca01g00975 416 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Cca01g00975 416 SUPERFAMILY ARM repeat 105 391 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00975 Cca-Chr1 14094920 14096872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00975 1 416 U-box Gene Family AT1G49780 66.118 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00975 - - gmx:100778730 719.924