Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00971 ATGCTCTACGGGCTTCCCTCTTTGTTGGGATTGTTGGCTTTTCTTGGAATGCAGCTTCCTGTCATAATGGCTGATTGCCCTTTGGACTTCACTAATTCAAACTTCACACTGGCATCCTCTTTATGTTCTAACCATGGTGACCGGGGAAAATGTTGCCGTTACATTAATACTAATGTTGCAATTTCTGTAGCCCGTTTTGCAAATGCAACAGGCAACTTAGGGGTCCCTCTGAATACATCTGACATCTGCCTGCAAACCATATCTCAAACTTTGCAACTTTACGGAGTTTCACAAAATGCAACAGCTTTCTGTAGTTTTGGGACAAAACTTCCTGTTAATTATGAATGCAAGGGGAGAACTAGTGTTGTCCATATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAACTGCAAAGTGCCACTAGGAGAGGAAAGTAAATGTAAGAAGTGCTTAAATGCTGGCATTGGTTATCTGCATCATCTTGGAATAGAAGACAATATAACACTGAGTACATGTCGTGATGCCACTTTTGCTGCACTAGCAAGCCAAGTTGATGAGATATCTACTATTGACATCGCAATTTGTTTCTTTGGAGTTCAAGGACTTCTCAAGTCTCCTGTTTCAGAGTCATCCCCATCCTTGCCTGCGCCTAAGGCTTCTCCAAGCCCTCTGGTTGCTGGTGGCCCAAGTCAACCATTGTTAAGTGCTCCTTTAAAGGGAAGCAATCATTCATATCATCTGACACTAGTTCCAGGTATTGCTATCGCAGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACGAACCTGATAATTTTGGTAAAACCGGCTCAAAAACCTTACCTCCTTTTGCAACGTGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAAGGCAACAGAGGATTTTAGCACTATTATTGGTCAAGGGGGATTTGGAACAGTGTATAAAGCTCATTTTTCTGATGGCCAGGTCGTAGCAGTAAAACGGATGAACAGAATCTCTGAGCAGGGGGAGGATGAGTTCTGCAGAGAAATTGAGCTTCTTGCTCGGCTGCACCATCGGCATCTTGTTGCTTTAAGAGGCTTTTGCATTAAAAAACAGGAGAGGTTTCTTTTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCAGGTAAAACACCTTTAAGTTGGCGAACTAGAATTCAAATTGCAATTGATGTGGCCAATGCATTGGAGTACCTTCATTTTTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCTAAGATAGCTGATTTTGGCCTTGCACAAGCTTCAAAAGATGGTTCAATATGCTTTGAACCTGTAAACACCGAAATTCGGGGAACTCCTGGTTATATGGATCCTGAATATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGATATATACAGTTTTGGGGTGTTACTACTTGAAATTGTGACAGGAAGACGAGCTATTCAAGATAACAAGAATTTGATAGAATGGGCACAACCATACATGGAATCAGAAACGAGACTATTGGAGCTAGTAGATCCCAATGTGAGAGAATCTTTTGACTTGGATCAGCTCCAAACAGTGATCACTATAGTAGTATGGTGCACCCAGAGAGAAGGAAAGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCATAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAACGAAGCAATGTTTCACAGCGGAGATGGAAGATATCTAGCTTCATCTTCAAGTACATCTCGGTCATATTGCAGTAGGAGCTTTTTGCTTGAGAGTGGCTCTCCACAGTCCCCGCCAAATTTGTTCTCTGTCTGA 2016 0.4201 MLYGLPSLLGLLAFLGMQLPVIMADCPLDFTNSNFTLASSLCSNHGDRGKCCRYINTNVAISVARFANATGNLGVPLNTSDICLQTISQTLQLYGVSQNATAFCSFGTKLPVNYECKGRTSVVHMLQSPRFTEVTKNCKVPLGEESKCKKCLNAGIGYLHHLGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLKSPVSESSPSLPAPKASPSPLVAGGPSQPLLSAPLKGSNHSYHLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDEPDNFGKTGSKTLPPFATWKFQEGSSSMFRKFSYKEIKKATEDFSTIIGQGGFGTVYKAHFSDGQVVAVKRMNRISEQGEDEFCREIELLARLHHRHLVALRGFCIKKQERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSICFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLIEWAQPYMESETRLLELVDPNVRESFDLDQLQTVITIVVWCTQREGKARPSIKQVLRLLYETSEPMHSEFLQAVEDEECQGSQHRGRRSKGKMLRNEAMFHSGDGRYLASSSSTSRSYCSRSFLLESGSPQSPPNLFSV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00971 671 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00971 671 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Cca01g00971 671 SUPERFAMILY Protein kinase-like (PK-like) 303 594 IPR011009 -
Cca01g00971 671 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Cca01g00971 671 PANTHER OS01G0750732 PROTEIN 6 671 - -
Cca01g00971 671 CDD STKc_IRAK 329 591 - -
Cca01g00971 671 PANTHER BNAC06G02630D PROTEIN 6 671 - -
Cca01g00971 671 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00971 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Cca01g00971 671 SMART serkin_6 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00971 671 Gene3D Transferase(Phosphotransferase) domain 1 399 616 - -
Cca01g00971 671 Pfam SPARK 25 159 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00971 Cca-Chr1 14017792 14024227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00971 24 670 Receptor kinase-like Gene Family AT3G19300 60.983 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Cca01g00971 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00971 - - gmx:100807955 1194.1