Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00970 ATGGCTACCCCAAGTAAATCAACACCAATAACTTCAGATACATTGGAACAGAAAGGAAAAACCATGAATGAATCAAATGCAAACATTCTTCAATGCCCTTCAAACCAGCAACCCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAATTGTCCTGTCCCAAGTGATGTACGCCCTGAAGATGTAGCGGCTAATATAAGAATGGCTTTATGGGTGCATCCAGTAATTAGAGGAGCTGTTATGATGCGACTTAGAGAAGGCTGTCAGAGAACTGGTGTTAAACTTATAGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTGCACATTCTTGGTCAGAGGGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGGGTTTCATCTGCCCTATGCAATGCTGGTAAATTTGTTTGGGACTGGCCTAGTGTTGCTCGTGGAGAAGGCTTTGTGCCTCCCTCAAAGGCTTTAGTGCCACCCCGTGGATGTCCAGTTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACAACCCTGATGGACCAAATGAAGAAGAAGCAATAGTTTATAGAGGAGGATCTATGCCTTCAAGTGACCATAATGAATGCCAGTTCTGGGTACAGCCTGGGGATTTAAATGGTCTCAAAGGGCAGATGGTAAGGTTGCTCGAACTTTTTGGAGGATGCCTGCCTCTTGCCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTCGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATGCTATTGCTGTGGAAGGGAAAGGGAATCGTAAATTTGTGTATCTTAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTGTCTCTGGCAAAGAAGGATAATAAGAAAGGAAAGGGAGCCCAGGAAGAGAATCTGAATGTTGTCACTGGTGGATGCTCTTCTGATGAGTTCTCGGATGAGGAAAGAGTAGTCACAGAAGAACATGATGAAAAAAGTTACACAGGAAAGGGCAATCAGGGAAGAGTAGTCAAATGTGAAGTTGATGACCGTGTTATTGAGCAGTTCAAGAATGAGCTGCAAGAGATTCTAGTATGCTATTCTTGCCGTATATTCTTAGGCTGTTTTGAGGCTATATACCAGCAACGATACAAGAAAGAACTGGATTATCAGAGATTTGGTGTTCACAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTAGTATTGCATGAGGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGGGTAGTTAG 1413 0.4381 MATPSKSTPITSDTLEQKGKTMNESNANILQCPSNQQPHSSLDGPVAILWDIENCPVPSDVRPEDVAANIRMALWVHPVIRGAVMMRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGCPVELAGYLMGCHINDNPDGPNEEEAIVYRGGSMPSSDHNECQFWVQPGDLNGLKGQMVRLLELFGGCLPLARVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGDAIAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDNKKGKGAQEENLNVVTGGCSSDEFSDEERVVTEEHDEKSYTGKGNQGRVVKCEVDDRVIEQFKNELQEILVCYSCRIFLGCFEAIYQQRYKKELDYQRFGVHKLEDLFEKVSDVVVLHEEPVSKRKFLAAVGS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00970 470 Pfam OST-HTH/LOTUS domain 253 317 IPR025605 -
Cca01g00970 470 Pfam OST-HTH/LOTUS domain 396 458 IPR025605 -
Cca01g00970 470 Gene3D - 72 179 - -
Cca01g00970 470 ProSiteProfiles OST-type HTH domain profile. 395 469 IPR025605 -
Cca01g00970 470 PANTHER LIMKAIN B LKAP 25 466 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca01g00970 470 Pfam NYN domain 45 173 IPR021139 GO:0004540
Cca01g00970 470 CDD PIN_limkain_b1_N_like 45 159 - -
Cca01g00970 470 Gene3D - 249 318 IPR041966 -
Cca01g00970 470 Gene3D - 391 462 IPR041966 -
Cca01g00970 470 PANTHER ZINC FINGER, CCHC-TYPE, MEIOSIS ARREST FEMALE PROTEIN 1, PIN DOMAIN-LIKE PROTEIN-RELATED 25 466 - -
Cca01g00970 470 CDD LOTUS 396 458 - -
Cca01g00970 470 ProSiteProfiles OST-type HTH domain profile. 249 321 IPR025605 -
Cca01g00970 470 CDD LOTUS 250 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00970 Cca-Chr1 14015107 14016939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00970 42 184 C2H2 Transcription Factor Family AT5G61190 38.562 1.18e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00970 - - gmx:100818186 829.706