Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00957 ATGTCTTCCTCCTCCTCCTTCTCTCCGGCCACACTCACCACCGAGCAGGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGCTCCACCTCCACCTCCACCTCCCACTCCGAGTTTCGCCTCCCGGAGGCCCTCGCCGGGCCCAGCCTCGCGCCGCCGCCCACCGCCGACACGTGTCGCGAGTGCAACATCGCGGGCTGCCTCGGCTGCAACTTTTTCCCCgaagagaagaagaagcagaagcgggccaagaagaagTACCGCGGCGTCAGGCAGAGGCCATGGGGGAAATGGGCCGCCGAGATTCGGGACCCGCGCCGCGCCGCCCGGGTCTGGCTCGGGACCTTCAACACCGCCGAGGAAGCCGCCCGGGCCTACGACAGGGCCGCTATTGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTGGTCGACGAGTCCTTGAGCCAGCAGCAGCCCACCCAGCCAGAGAGGGTTATCGTtaacgctaacgctaatgctaactctaacgctaacACTGAAGAACAAATAAAGGAGGAGAATCTGAATCTGAATGAGGGTATGCAAATGGATTCGCTGGCTTTCGGGAACAAGGAAACCGAATTCTGGGATAGGATTGGCGATGCTGATTTTCACCAGCTCATGATGATGATGGATCATTTTGCCGGAGATTCTTCCGACTCTGCCACTGGGAACACTCTTAGTTCCTGA 723 0.556 MSSSSSFSPATLTTEQELSVIVAALTNVVAGSTSTSTSHSEFRLPEALAGPSLAPPPTADTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDRAAIEFRGPRAKLNFPLVDESLSQQQPTQPERVIVNANANANSNANTEEQIKEENLNLNEGMQMDSLAFGNKETEFWDRIGDADFHQLMMMMDHFAGDSSDSATGNTLSS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00957 240 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Cca01g00957 240 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Cca01g00957 240 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Cca01g00957 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 5 224 - -
Cca01g00957 240 Gene3D AP2/ERF domain 88 148 IPR036955 GO:0003700|GO:0006355
Cca01g00957 240 CDD AP2 90 146 IPR001471 GO:0003700|GO:0006355
Cca01g00957 240 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Cca01g00957 240 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 224 - -
Cca01g00957 240 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Cca01g00957 240 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00957 Cca-Chr1 13591606 13592632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00957 12 158 AP2-EREBP Transcription Factor Family AT4G34410 49.180 2.47e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca01g00957 AP2 3.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00957 - - ccaj:109799734 454.136