Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00939 ATGGCTCAGCCTTCCACCAACGGCGATCTGAATCAGCAGGCTCAgcagccgcagcagcagtggccgcagccgcCTCAGTATCAGCACCAATGGATGGCCATGCAGTACCCGGCCACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCTCAGCATTACATGCCCTATGTccaccaccagtacccgcccccgcccccgccgccccagcaccaccaccaccacaacaccaAGCAGCTCTCCGCCGCCGCCTCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTTCACCATTGGATGGACGAGAACTACCTCCATAACTGCTTCGCTCACACCGGCGAGGTTGTGTCAGCCAAGGTCATACGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTGGAGTTCTATTCGCGGGTGACAGCGGAGAAAGTCTTGCAGAACTATAATGGCACCATGATGCCAAATACGGATCAGGCGTTTCGTCTGAATTGGGCCACGTTCAGTGCCGGCGATAGGCGTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGAGACTTGGCCATAGATGTTACTGATGCAATGCTGCAAGAGACTTTTGCTAGCAGATTTTCGTCCATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGCTACGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACAAGGGCAATGACTGAGATGAATGGTGTTTATTGTTCTAGTAGGCCCATGAGAATAGGTGTTGCTACTCCCAAGAAAACATATGGCTATCAACAACAATATTCTTCTCAAGCTGTAGTGTTAGCTGGTGGACACCCAGCTAATGGTGCTGTTGCCCAAGGTTCCCACTCTGAAGGGGATTTTAACAACACTACCATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGAACTCAGACAACCATTTTTGCAATTCGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGACATTGAATGGGACAGTAATTGGGAAGCAAACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAACTGATTCCAATGGAAGCCATTATGGTGGTCAGGGTTATGGAGGGCATGGATTTGCTGCGAGACAGAATCAGGATATTGCCATGCAGCCTGCTGCTGCAGTTCAAGGGGCTTCCTAA 1269 0.446 MAQPSTNGDLNQQAQQPQQQWPQPPQYQHQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHQYPPPPPPPQHHHHHNTKQLSAAASSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRVTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHPANGAVAQGSHSEGDFNNTTIFVGGLDSDISDEELRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQTLNGTVIGKQTVRLSWGRSPGNKHWRTDSNGSHYGGQGYGGHGFAARQNQDIAMQPAAAVQGAS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00939 422 Gene3D - 288 409 IPR012677 -
Cca01g00939 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 377 IPR000504 GO:0003723
Cca01g00939 422 Gene3D - 91 171 IPR012677 -
Cca01g00939 422 SUPERFAMILY RNA-binding domain, RBD 60 174 IPR035979 GO:0003676
Cca01g00939 422 SUPERFAMILY RNA-binding domain, RBD 184 280 IPR035979 GO:0003676
Cca01g00939 422 CDD RRM1_SECp43_like 93 173 - -
Cca01g00939 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Cca01g00939 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 370 IPR000504 GO:0003723
Cca01g00939 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Cca01g00939 422 SMART rrm1_1 306 373 IPR000504 GO:0003723
Cca01g00939 422 SMART rrm1_1 187 261 IPR000504 GO:0003723
Cca01g00939 422 SMART rrm1_1 93 168 IPR000504 GO:0003723
Cca01g00939 422 MobiDBLite consensus disorder prediction 61 84 - -
Cca01g00939 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Cca01g00939 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Cca01g00939 422 MobiDBLite consensus disorder prediction 1 26 - -
Cca01g00939 422 CDD RRM2_SECp43_like 185 264 - -
Cca01g00939 422 Gene3D - 173 278 IPR012677 -
Cca01g00939 422 CDD RRM3_NGR1_NAM8_like 304 375 - -
Cca01g00939 422 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 18 421 - -
Cca01g00939 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 421 - -
Cca01g00939 422 SUPERFAMILY RNA-binding domain, RBD 296 401 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00939 Cca-Chr1 13325490 13329641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00939 94 384 Eukaryotic Initiation Factors Gene Family AT4G34110 30.537 1.74e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00939 - - gmx:100814564 664.455