Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00936 ATGGGGGTTTGCACTTCGAAGCCGCAGAAGCCGAACCCTTACGCGCTTCGCGAAACCGAAGCCGACCCTTCTTCACAGGCCCCGCTCAGTCCCGGCGCCGCCGACAACGGCCGCCGGAAAGATGACGTCGCCGCCGGGAAACAGTCGCCGTTCTTCCCGTTCTACAGTCCGAGCCCCGCACGCTTTCTGAAGAAGTCTCCGGCGCCGGCGGGAGGGAGCAGGAGCGCGAGCTCCACGCCGAGGAGGTTTTTCCGGCGACCCTTCCCGCCGCCGTCGCCGGCGAAGCACATAAGGGCGGTGCTGGCGCGGCGGCAGGGGAAGAAGGCCGCGACGGCGATTCCGGAGGAGGGGGAGGAGGGTGGCGGTGGCGCGGCGGATTTGGATAAGAGGTTTGGGTTCTCCAAAGAGTTCACTAGTAGGTTGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAACTCAAGGGTCAACAAGTGGCTGTTAAGGGCATACCAAAAGCAAAGATGACAACAGCAATTGCTATTGAAGATGTTAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATCTAATACAGTTCTATGATGCATTTGAAGACCATGACAATGTCTACATTGTAATGGAGTTATGTGAAGGTGGGGAGCTCTTAGATATGATATTGTCAAGAGGAGGTAAATACTCGGAAGATGATGCAAAGGCTGTCATGGTGCAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCAGAGAATTTTCTGTATACTAAAAAGGATGAAAATTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATACTATGTGGCCCCCGAAGTTCTCCATAGATCCTATAGCACAGAGGCTGATGTTTGGAGTATAGGCGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCAAGCTTTGATGAAACACCATGGCCAACTTTATCTTCAGAAGCAAAGGATTTTGTAAAACGCCTATTGAATAAGGACCCTCGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAATGATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCATCCTTACGGAAGGCTGCCTTAAGGGCCTTGTCAAAAACATTGACTGCTGATGAACTCCATTATCTGAGGGGGCAATTTGCTCTGCTAGAACCAAGCAAAAATGGCAGCATATCTTTAGAGAACGTCAACAAGGCCCTGATAAAATATGCAACAGATGCAATGAAAGAGTCTCGCATTCCTGACTTTCTTTCCTCGCTGAATTCATTGCAATATAGAAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTGCATCAACTTGAAGCTCTTGATCGTTGGGAACAACATGCTCGCTGTGCATATGAACTTTTTGAGAAAGATGGAAACCGGGCTATTGTCATTGAAGAGCTTGCTTCAGAACTTGGACTTGGTCCCTCTATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACTGATGGGAAACTAAGCTTTCTTGGGTTTGTCAAATTATTACACGGTGTATCTAGCCGAAGCCTTGCAAAGGTTCAATAA 1788 0.4698 MGVCTSKPQKPNPYALRETEADPSSQAPLSPGAADNGRRKDDVAAGKQSPFFPFYSPSPARFLKKSPAPAGGSRSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAATAIPEEGEEGGGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKGIPKAKMTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDHDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTKKDENSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPTLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELHYLRGQFALLEPSKNGSISLENVNKALIKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00936 595 SUPERFAMILY Protein kinase-like (PK-like) 137 438 IPR011009 -
Cca01g00936 595 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00936 595 PANTHER CDPK-RELATED KINASE 2 37 589 - -
Cca01g00936 595 SUPERFAMILY EF-hand 431 585 IPR011992 -
Cca01g00936 595 MobiDBLite consensus disorder prediction 1 125 - -
Cca01g00936 595 Gene3D - 428 582 - -
Cca01g00936 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Cca01g00936 595 CDD STKc_CAMK 142 402 - -
Cca01g00936 595 Gene3D Phosphorylase Kinase; domain 1 143 229 - -
Cca01g00936 595 Gene3D Transferase(Phosphotransferase) domain 1 230 415 - -
Cca01g00936 595 Pfam Protein kinase domain 142 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00936 595 Gene3D - 421 512 - -
Cca01g00936 595 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 589 - -
Cca01g00936 595 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00936 595 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00936 Cca-Chr1 13279928 13285182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00936 1 591 EF-hand Containing Proteins AT3G50530 72.484 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca01g00936 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00936 - K00924 gmx:100807672 1049.27