Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00933 atggggagagGAAGGTGCTTCTTGGACATTGGCATAGGGGAAGAGCTTGAAGGAAGGATAGTGGTGGAGCTTTTCGATGATGTGGTTCCCAAAACTGCTGAGAATTTCAGAGCTCTATGCACTGGTGAGAAAGGCATTGGTCCAAATACTGGGGTGCCCCTCCATTTCAAGGGGTCTTGCTTTCACCGTGTTATTAAAGGCTTTATGATTCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAATCTATATATGGACCTAAGTTTGAAGATGAAAATTTTGAGTTCAAGCATGAAAGGAAAGGGATGCTATCAATGGCAAACTCTGGTCCTAATACAAATGGATCTCAGTTTTTTATCACTACTACCCGAACTTCTCATCTAGATGGTAAGCATGTTGTGTTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGATCAATTGAGCATGTTGTGACTGGAGAGGATGATCGTCCCACTCTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGATGGGATTTCTAACTTTTTCAAAGATGGTGACACCTATCCGGATTGGCCAGCAGACCTTGATGAGAGCCCTAATGAACTTGAGTGGTGGATGAAATCTGTTGACTCAATCAAAACTTTTGGCAATGAGCATTACAAGAAACAAGACTACAAAATGGCTCTAAGGAAGTATAGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAGGAAGGCATTGATGAAGAGAAAAGTTCAGGTTTGAGAAAAACAAAGTCTCAGATCTTTACAAACAGCTCTGCTTGTAAATTGAAGTTAGGGGACCTTAAAGGAGCATTATTGGATACAGAATTTGCAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGGCATATATAGCACTCCATGACATTGATGCTGCGGTTGAAAGTTTTAAGAAGGCATTGACCTTGGAGCCAAATGATGCTGGAATTAAGAAGGAACTTGCTGCTGCTAGGAAGAAGGTGAGCATAGCTATCTAA 1050 0.4152 MGRGRCFLDIGIGEELEGRIVVELFDDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGPKFEDENFEFKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVVTGEDDRPTLDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKTFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSSGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMREGDNNAKALFRQGQAYIALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKVSIAI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00933 349 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 346 - -
Cca01g00933 349 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Cca01g00933 349 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Cca01g00933 349 SMART tpr_5 212 245 IPR019734 GO:0005515
Cca01g00933 349 SMART tpr_5 298 331 IPR019734 GO:0005515
Cca01g00933 349 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Cca01g00933 349 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 Gene3D Tetratricopeptide repeat domain 206 347 IPR011990 GO:0005515
Cca01g00933 349 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 171 IPR002130 GO:0000413|GO:0003755
Cca01g00933 349 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Cca01g00933 349 CDD cyclophilin_ABH_like 5 171 - -
Cca01g00933 349 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 346 - -
Cca01g00933 349 Gene3D - 2 179 IPR029000 -
Cca01g00933 349 SUPERFAMILY TPR-like 207 343 IPR011990 GO:0005515
Cca01g00933 349 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00933 Cca-Chr1 13227335 13232631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00933 14 170 U-box Gene Family AT5G67530 44.304 1.81e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00933 K05864 - gmx:100804110 656.366