Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00925 ATGGGTTCGGTTCCCTCAGAACTGAGCTTGGTTTTAAGACCCTCCTTTGTCCCCAAAACCATCACTGATTTCCTCTCCCAACTCTCCTCCGCCTCCGACAAGCTCGCCACCCTCCACGATTTCCTCGCCCGATTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAACGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCACTTCTCAAAGCGGAATCCAAGAAATGCACCCCTGTCTTGGAGGAGTTCATTCCCTTGAAGAAGGACCGTGATCACACCCACCAAAACCATCGCAACGACACCGAGTGCACCACGGATAAGAGGAATTGGATGAGCTCTGTTCAGCTTTGGAATAACTCTACCACTAATAACAACAATGCCTCTGATCGCAAACAGCTTCATAACTTAGAAACCAAGAAAAGTGAAGAAGGACAATCTGTGGGCGAGGATCCTTTCCAGTCATGTAGTAATAGAAATGGAGGGAGAAGGGCGTTTATGCCTTTTTCTAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTCACAACAGTGGCACTGGCGGCTGCTACCAAAGAAGAGAAGGAGGACAGTGTTATGAATAGGCTTTCTCTTCTTACTACCCCTTCTGTGAAAGAGGGATGTGGTTCAAGGGGGTCGAGAAGCAGTTCCAACATGGCTGTTTCTTCTTCTTCTCCTCCTCCTACGGTTCAGCCCACTTTGCGGGCTTCATCGCTTCAGCAGGCTGCTAGGAAACAGAGGAGATGCTGGTCCCCTGAGTTGCACAGACGATTTGTTAATGCCTTGCAGAAGCTAGGAGGTTCTCAAGCAGCAACACCAAAGCAAATTAGAGAGCTCATGCAGGTTGATGGCCTAACTAACGATGAAGTAAAGAGCCATTTACAAAAATACCGACTTCATACACGGAGAGTTCCAGCTTCGACTGCTAATCAGCCAGTTGTGGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAATGACTCTTCAAAGGTTAGCAGTTCGGGTTCAGGTTCCCCTCAAAGTCCCCTTCATTTGGGTGCAGGGTCTCGGGGAGGGACATCCCCAACTGAGGGTGACAGCATGGAGGATGATGAAGATGCAAGATCCGAGAGTTATAGCTGGAAAAGTCACATGCACAAACCTGGAAAAATTGATGTATAG 1191 0.4861 MGSVPSELSLVLRPSFVPKTITDFLSQLSSASDKLATLHDFLARLEDELRKIHAFKRELPLSMLLLNDAISLLKAESKKCTPVLEEFIPLKKDRDHTHQNHRNDTECTTDKRNWMSSVQLWNNSTTNNNNASDRKQLHNLETKKSEEGQSVGEDPFQSCSNRNGGRRAFMPFSRYSSSSSSVPVTTVALAAATKEEKEDSVMNRLSLLTTPSVKEGCGSRGSRSSSNMAVSSSSPPPTVQPTLRASSLQQAARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPASTANQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLGAGSRGGTSPTEGDSMEDDEDARSESYSWKSHMHKPGKIDV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00925 396 Gene3D - 253 311 - -
Cca01g00925 396 Pfam Myb-like DNA-binding domain 256 307 IPR001005 -
Cca01g00925 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 311 IPR017930 -
Cca01g00925 396 MobiDBLite consensus disorder prediction 377 396 - -
Cca01g00925 396 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 254 309 IPR006447 GO:0003677
Cca01g00925 396 MobiDBLite consensus disorder prediction 211 244 - -
Cca01g00925 396 MobiDBLite consensus disorder prediction 144 164 - -
Cca01g00925 396 MobiDBLite consensus disorder prediction 335 396 - -
Cca01g00925 396 PANTHER TRANSCRIPTION FACTOR HHO6 7 390 - -
Cca01g00925 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 390 IPR044787 GO:0003700|GO:0006355
Cca01g00925 396 MobiDBLite consensus disorder prediction 335 353 - -
Cca01g00925 396 SUPERFAMILY Homeodomain-like 252 312 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00925 Cca-Chr1 13096431 13099456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00925 6 330 G2-like Transcription Factor Family AT2G03500 40.171 2.00e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca01g00925 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00925 - - gmx:100806237 584.719