Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00907 ATGGCATCAACATCGCCTCTCGAGATATTAGTTCGAGGACCCGAAGATTTCTCGCTCTGGACCGGACCCCCCTTCGCCAACGCTCAACCTAGCGTGAAGCTCGAGAAGGTGAGTTGCGCGAGTGCCAAGTTCAGCGACGATGGATCCAAACTCATGGTCACCAAATCCAACTCCATCGTCGCTCTATACGACTGCAGCACCGCCAAAGAGATTAGGTCTTTTCAAGTTCCCAATCTCCTAGCCACCGCCTTGTCGCCCCGTGGAACCTACTTGCAGACCTTCCAGAAACCCTCCGCGCCGCAGGACAAGAACGTCACGCTCTGGAAAATCGACACCGCTGATCCCGTTTACCAGCACTCCCAAAAGAACATCACCAAATCCAATTGGCCTGCGATTCAGTTTAGTTCCGATGAAGCTACTGCATGCCGGTTGGCTACTAATGAGGTACAATTTTTTGATGCCGGGGATTTTTCGAAAGGAGTTACCTGTCGGTTGAGAGTTCCGGGAGTTTCTGCTGCTGAGCTTTCTAGTTCACCTGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCATCTCAAAGTCAACCTATTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCGTGGCTCAACTGGGCTTTTAGTAGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGTGAATCGAAGTTATGCTATTTGACTACAGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCTATTCATGATGCTCAGTGGTCACATTCTGGTTTGGAATTTGCTGTTGTATATGGGTTTATGCCTGCTAAAGCAACACTGTTCGACAAGAAGTGCAATCCTTTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGTTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATAGATAAGAAACAACTTGGAACCACCAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTGTTTACAATGGGTCATTGTACTTCAAGAAAATGTTCGACAAATTGTACCAGGCTGATTGGAAACCAGAGTCACCAGATAAGTTTGGTGATATTGCCGAATTAATCAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCACCAGGTCAAGGACCAAAATCAACTCAGACTTCTACAAAAGTCTCGTCTGCCAACCCCCCTACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCAGCTTCTATTCAGGCAGAGCTGTTTGGAGAGACTCCTACTGAATCAATGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCGAGTTCGTCTTGA 1545 0.4576 MASTSPLEILVRGPEDFSLWTGPPFANAQPSVKLEKVSCASAKFSDDGSKLMVTKSNSIVALYDCSTAKEIRSFQVPNLLATALSPRGTYLQTFQKPSAPQDKNVTLWKIDTADPVYQHSQKNITKSNWPAIQFSSDEATACRLATNEVQFFDAGDFSKGVTCRLRVPGVSAAELSSSPGSHVAAFVPESKGVPASVQIFACGNASQSQPIARRSFFRCSTTQLKWNRGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSHSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFVYNGSLYFKKMFDKLYQADWKPESPDKFGDIAELIKSLNLVQLEDKKPPGQGPKSTQTSTKVSSANPPTQKPAAYRPPHAKNAASIQAELFGETPTESMSKNALRNKKKREKQKEKKAASDASSS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00907 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 6 511 IPR011387 GO:0003743|GO:0006413
Cca01g00907 514 SUPERFAMILY DPP6 N-terminal domain-like 38 392 - -
Cca01g00907 514 Coils Coil 490 510 - -
Cca01g00907 514 PIRSF Transl_init_eIF2A 1 514 IPR011387 GO:0003743|GO:0006413
Cca01g00907 514 MobiDBLite consensus disorder prediction 432 514 - -
Cca01g00907 514 Gene3D - 193 396 IPR015943 GO:0005515
Cca01g00907 514 Gene3D - 26 191 IPR015943 GO:0005515
Cca01g00907 514 Pfam Eukaryotic translation initiation factor eIF2A 214 407 IPR013979 -
Cca01g00907 514 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00907 Cca-Chr1 12733347 12740210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00907 8 414 Eukaryotic Initiation Factors Gene Family AT5G27640 22.374 1.47e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00907 K15026 - gmx:100810278 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00907 01 12733347 12740210 Cca01g00907 01 12733347 12740210 ECH