Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00906 ATGGTGGACCACTTCATTGTTTGCATTGATCAGATTATAGCTTCCTCGGCCTGTTTTGGATCAGTGAATGGGAAACAGTGTGATGGTGTTGACCCATTAATCCCCGTTTCTGGTAATGGTGGAGAAGGGTGTTCCTCTTCTTCAAACAATGGTGATGTTGTTGTTGAGTGCAGAATATGCCTTGAAGAAGATCAAGCCCAAGCCATGGAGGCCCCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAAGAAGTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACGATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCAGTCAGAAACAATGCAATTATGGCAATTGATATAAGGCAAGAATGGGGGCATAATGCTGGTCTCCATGTGGCTCTAACTTCAGCAGAGGACCAGTTGCTGCAAACTGAATATGAAGATTATGCCATGTCAGAAACCAGTAGCATTGTTTGCATTCGCTTTGTCACATTTATTTTGCTGATAGTTTTACTTGTACACCAAGCTTTGATGGTCGCAAAGAACTCTGCAACTGGGCTAGAAGCATCAATTATCTTTAACTTTGAGATGCCACTCCTTCAATTTGCTGGTGTTCTTTTGCCATGCTATGCGATAGCTCGTTCCTGGTATGTCATACAGAACCGGAGGAGAAGACAAGTCATAGGTTAA 705 0.4199 MVDHFIVCIDQIIASSACFGSVNGKQCDGVDPLIPVSGNGGEGCSSSSNNGDVVVECRICLEEDQAQAMEAPCSCNGTLKFAHKKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRNNAIMAIDIRQEWGHNAGLHVALTSAEDQLLQTEYEDYAMSETSSIVCIRFVTFILLIVLLVHQALMVAKNSATGLEASIIFNFEMPLLQFAGVLLPCYAIARSWYVIQNRRRRQVIG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00906 234 ProSiteProfiles Zinc finger RING-CH-type profile. 49 109 IPR011016 GO:0008270
Cca01g00906 234 SUPERFAMILY RING/U-box 55 106 - -
Cca01g00906 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 112 IPR013083 -
Cca01g00906 234 PANTHER OS01G0894600 PROTEIN 1 231 - -
Cca01g00906 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 231 IPR033275 -
Cca01g00906 234 Pfam Protein of unknown function (DUF3675) 108 221 IPR022143 -
Cca01g00906 234 CDD RING_CH-C4HC3_MARCH 57 103 - -
Cca01g00906 234 Pfam RING-variant domain 57 102 IPR011016 GO:0008270
Cca01g00906 234 SMART ringv_2 56 103 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00906 Cca-Chr1 12717466 12724610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00906 56 102 C3H Transcription Factor Family AT2G37950 42.000 9.93e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00906 - - gmx:100812120 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00906 01 12717466 12724610 Cca01g00906 01 12717466 12724610 ECH