Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00903 ATGAACGTCACCGTTGATTCCGCGCTCTTCGCGTTTCTCTTCCCTTCCCTGTGGGAGATCAAAGTCGCCGTCGCCGCCTCCGTCTTCGTCATAATCACCTATCACTTCTTCGCGCCCCGAACCGCTCACCTCCACGCTGATCCGTCGCTCTCCGACAATTCCCCCGCCGCCGCCGATCTCGCCGACGATAAGGACAAGATGGGCCTGCCTAAAGGGGATTCTCAAACCAGTTCGGGGTACCTGATCAAGTTAGAACTATTGGCTGCTAAGAATCTTGTTGGTGCGAACCTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTACCTGGTTCAAGAAATCCAATGTGGGGGGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGCAAGTGATTCCAGGATAAATGGTTATGGAGGAGCCAACCCTCGAAGAAGGATTCCACCCTTGGAAAATCAGGGCCCTACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAAACTATATTTAATCTTCATCCAGATGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCATCCTGGCACATTTGTTTCCATTCCAATGTGTTTTCAAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATCAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTACCTCCTTTGGGAAGTCCTGATGGTAGGGTCAGATATATGTTTGCATCATTTTGGAACAGGAATCATGCAGTCAGAACTCTACAGCGTGCAGCAAAGAAATTTCATGAAATGTTGGAAGCTGAGAAGAAGATGGGCCAGTGGCATACAGCAGATGAATATGATGGTCAAGTCCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCTCCAGACACAGCCATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAGAAAAACCTGGTGTTTGAAACTGTGCAGCAGGCACATGATGTTCCATTTGGATCCTACTTTGAGGTGCACTGTAAATGGAGCTTGGAGACAATTAATGAAAGCTCATGTACTCTGGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAATCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGTTCGTATATAAAATCATCAAATACCTCTAAATCTAATGACGAGAATGATGAAGCCTCTTCGCCCCCTGCAGCGACCCTGGAGAACTAA 1530 0.4458 MNVTVDSALFAFLFPSLWEIKVAVAASVFVIITYHFFAPRTAHLHADPSLSDNSPAAADLADDKDKMGLPKGDSQTSSGYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSASDSRINGYGGANPRRRIPPLENQGPTVVHQKPGPLQTIFNLHPDEVVDHSYSCALERSFLYHGRMYVSSWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAVRTLQRAAKKFHEMLEAEKKMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINESSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVDVMLDVARSYIKSSNTSKSNDENDEASSPPAATLEN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00903 509 Pfam C2 domain 83 177 IPR000008 -
Cca01g00903 509 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 359 500 IPR044655 -
Cca01g00903 509 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 359 IPR044655 -
Cca01g00903 509 MobiDBLite consensus disorder prediction 48 74 - -
Cca01g00903 509 Gene3D - 230 349 IPR011993 -
Cca01g00903 509 PRINTS C2 domain signature 97 109 IPR000008 -
Cca01g00903 509 PRINTS C2 domain signature 121 134 IPR000008 -
Cca01g00903 509 PRINTS C2 domain signature 142 150 IPR000008 -
Cca01g00903 509 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 80 191 IPR035892 -
Cca01g00903 509 ProSiteProfiles C2 domain profile. 63 178 IPR000008 -
Cca01g00903 509 Gene3D C2 domain 66 195 IPR035892 -
Cca01g00903 509 SMART gram2001c 229 295 IPR004182 -
Cca01g00903 509 Pfam VAD1 Analog of StAR-related lipid transfer domain 348 467 IPR031968 -
Cca01g00903 509 ProSiteProfiles VASt domain profile. 312 488 IPR031968 -
Cca01g00903 509 CDD C2 82 178 - -
Cca01g00903 509 Pfam GRAM domain 232 300 IPR004182 -
Cca01g00903 509 MobiDBLite consensus disorder prediction 486 509 - -
Cca01g00903 509 SMART C2_3c 81 177 IPR000008 -
Cca01g00903 509 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 359 500 - -
Cca01g00903 509 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00903 Cca-Chr1 12665463 12675730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00903 81 166 C2H2 Transcription Factor Family AT4G21160 25.581 1.86e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00903 - - ccaj:109813081 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00903 01 12665463 12675730 Cca01g00903 01 12665463 12675730 ECH