Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00900 ATGAGAAAGCTACAACACCTACATGCCAGTGCCATAAATAAAAGTCCATGCTTTTTAAATTTGCAAAGCAGCATTTTTGTCAGATATAAAAATAACAGTGCAGATGAAAATGTTGGTAAGGACTTGTTCTTGCAACATCTTCCAACCAACAAGCCTGAAAATAAAATAGAGATGCTGCCTCCTTGCTGGCGATCGTTCTGGAAGAAACAGGTCTTCACACACCACTCCAAGGGGAAGCAGGATTCTGATAACAAAGGCACAAAAGAGAAGAAGAAAGGAGTAGGAAAAATAAGGCATGGAGAGAACAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGCATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAGCAACTACTGGGGCTTAGGCCTGCCACTCCTCCTGAGAGACCAAAAACACCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCACCTTCTCCAAGGCCTCCATCTCCAAGGCCTGCTTCTCCAAGGGCTTCTTCTCCGCGAGTTACCTCTCCCAAAGCGGCATCTTCCCGGAATGCTCATCACCACAAGGAGGTTGGCTACAGACCAGAACCAACTTTGAGGCAACAGCAAGCCTCAGCTACTAAGATCCAGGCTGCTTACAGAGGTTATATGGCCAGGAGGAGTTTTAGAGCTCTAAAGGGTCTGGTTAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTAAATGCCATGAAACACATGCAGCTGTTAGTGAGAGTTCAATCTCAGATTCAGTCTAGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAACGATAAGGATGCAGCAAGTACCTTGGGCAAACTCACTTCTGAAGCAGGTAATGAAGAGTGGGATGATAGCTTACTGACAAAAGAGGAGATAGAGGCAAGGTTGCAGAGAAAGGTGGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACTCACACCCCAGTGACAGACACACGATCTGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGGCAAGCACCTGCAGCAGCAACTCCACAAGAAAGACAAGTCTTGAAGAATTTCCAACTCACACCTCCAAGACCATACTCAGAACAGAAGACTAGTCCAAGACCTGGCTCCAGCACTCAAAGAcagcagcagcagcagcagcCTCATTTTGCCTTTGACAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAGCCGGCGCGAACTCCTCCATTCAGAACTCCACAGGCAAATAGCTCAGGCTCTAAATTTGCAAGACCAAGGGGTGTAGGAGCAAATTCACCTTTTGATGTTCCACTGAAGGATGATGAGAGCCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACACTCTCTGCACAGGCCAAAGTACGTGCTAGTAGCAATCCTAGAGAAAGGCTTGGGGGGACTCCAACAAGTACTGACTCAAAGAGGAGGCTCTCATTCCCTTTGTCACAGGGAATTGGATCTTTCAAATGGTCTAAAGGGTTCTCAGGTAAGGATCAAAGGGTGCCAGACAAGTTTCAGTCTCTTGAATCTATAGGAAACGTGAGTGTGGATTCGACAGTGTCTTTGCCC 1725 0.4603 MRKLQHLHASAINKSPCFLNLQSSIFVRYKNNSADENVGKDLFLQHLPTNKPENKIEMLPPCWRSFWKKQVFTHHSKGKQDSDNKGTKEKKKGVGKIRHGENNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRAPSPRPPSPRPASPRASSPRVTSPKAASSRNAHHHKEVGYRPEPTLRQQQASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASTLGKLTSEAGNEEWDDSLLTKEEIEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVTDTRSGGFPWWWNWLERQAPAAATPQERQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQQQQQPHFAFDNMDTPTPKSTKSTIVTSSKPARTPPFRTPQANSSGSKFARPRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTLSAQAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSGKDQRVPDKFQSLESIGNVSVDSTVSLP 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00900 575 MobiDBLite consensus disorder prediction 502 530 - -
Cca01g00900 575 MobiDBLite consensus disorder prediction 389 461 - -
Cca01g00900 575 Pfam Protein of unknown function (DUF4005) 434 538 IPR025064 -
Cca01g00900 575 ProSiteProfiles IQ motif profile. 208 236 IPR000048 GO:0005515
Cca01g00900 575 MobiDBLite consensus disorder prediction 130 212 - -
Cca01g00900 575 MobiDBLite consensus disorder prediction 74 99 - -
Cca01g00900 575 PANTHER IQ-DOMAIN 5-RELATED 69 575 - -
Cca01g00900 575 MobiDBLite consensus disorder prediction 136 173 - -
Cca01g00900 575 PANTHER IQ-DOMAIN 13 69 575 - -
Cca01g00900 575 MobiDBLite consensus disorder prediction 74 98 - -
Cca01g00900 575 SMART iq_5 207 229 IPR000048 GO:0005515
Cca01g00900 575 Pfam IQ calmodulin-binding motif 210 229 IPR000048 GO:0005515
Cca01g00900 575 MobiDBLite consensus disorder prediction 389 480 - -
Cca01g00900 575 Gene3D - 189 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00900 Cca-Chr1 12601956 12608398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00900 69 575 IQD Protein Family AT3G59690 50.738 2.21e-147 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00900 - - gmx:100807777 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00900 01 12601956 12608398 Cca01g00900 01 12601956 12608398 ECH