Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00893 ATGGAAGGAGGAGGAGGAGCTGCTCCGCCGGCGGACACCGTGATGTCGGACgcggcgccggcggcacaggcggagccgcagcagcaggtgccggcggcggtggGGATGGGGATCGAGAATATTCCGGCGACGCTGAGCCACGGTGGAAGGTTCATCCAATACAACATATTCGGAAACATATTCGAAGTCACCGCCAAATACAAGCCACCCATCATGCCCATCGGCAAAGGCGCATACGGCATCGTTTGCTCGGCTTTGAACTCGGAGACTAATGAGCACGTTGCCATCAAGAAGATTGCCAATGCTTTTGACAACAAAATTGACGCCAAGAGGACCCTCCGCGAAATCAAGCTGCTTCGTCACATGGATCATGAAAACGTTGTTGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGATATTCAATGATGTTTACATTGCTTATGAGTTGATGGACACTGACCTTCACCAAATCATTCGATCAAATCAAGCATTATCAGAGGAGCATTGTCAGTATTTCCTATATCAAATCCTCCGTGGCTTGAAGTACATTCATTCTGCAAATGTCCTGCATAGGGACTTAAAACCTAGCAACCTTCTCCTGAATGCCAACTGCGACTTGAAAATTTGTGACTTTGGACTGGCTCGTGTCACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTGAACTCTTCTGACTACACAGCAGCAATTGATGTATGGTCTGTGGGTTGTATTTTCATGGAACTGATGGATCGGAAGCCTTTGTTTCCTGGAAGAGATCATGTGCATCAGTTGCGTCTACTTATGGAGCTGATTGGCACCCCATCAGAAGCTGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATCAGGCAACTGCCTCTTTATCGCCGTCAATCTTTTCAAGAAAAGTTTCCGCATGTCCATCCTGAAGCTATAGATCTTGTTGAAAAAATGTTAACTTTTGATCCTAGAAAAAGGATTACTGTTGAAGATGCACTGGCACATCCGTACTTAACATCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTCAGCTTTGACTTTGAACAACATGCTTTGACCGAGGAACAGATGAAAGAACTGATATACCGAGAGGCTATAGCATTTAACCCCGAGTATCAGTAG 1200 0.4283 MEGGGGAAPPADTVMSDAAPAAQAEPQQQVPAAVGMGIENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREIFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREAIAFNPEYQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00893 399 Pfam Protein kinase domain 73 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00893 399 SMART serkin_6 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00893 399 CDD STKc_TEY_MAPK 61 396 - -
Cca01g00893 399 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00893 399 MobiDBLite consensus disorder prediction 1 28 - -
Cca01g00893 399 SUPERFAMILY Protein kinase-like (PK-like) 73 361 IPR011009 -
Cca01g00893 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 27 398 - -
Cca01g00893 399 ProSitePatterns MAP kinase signature. 103 206 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cca01g00893 399 Gene3D Phosphorylase Kinase; domain 1 51 390 - -
Cca01g00893 399 ProSitePatterns Protein kinases ATP-binding region signature. 74 98 IPR017441 GO:0005524
Cca01g00893 399 Gene3D Transferase(Phosphotransferase) domain 1 152 380 - -
Cca01g00893 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Cca01g00893 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 27 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00893 Cca-Chr1 12414999 12420377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00893 1 399 MAP Kinase Gene Family AT2G43790 86.816 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca01g00893 Pkinase 1.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00893 K14512 - gmx:547616 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00893 01 12414999 12420377 Cca01g00893 01 12414999 12420377 ECH