Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00890 ATGTCTTCAACCTTCATCACTCTCCTCGTTTTATGCCTTTTTCTCGGTTCTTGTTTGGCACAGCCTCGCCGTGTCCTCCACCAACCACTCTTCCCAAGAGTGGCTACCCCTCCAACACAACCacctcaaccccaaccccaacccagacaccaccaacacacacaacccAAGCTTCCATTTTCATCTTCTTCATCGTCTTCTCCTCCACCGCACAAATCTTTCTTCCCTTCTCCTTCCTTCCGCTCGCCGCCCCTCCCTCCTCCGCCGCCCGTCGCCACCACCTTCCCCGCCAACATCTCCTCCCTCCTCCTCCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCGGATCGGACAGCCTCCGCCTCTTCCCGCCCTCCGACGCCGCCGAAACGAAACCCCCCGCGACGGAGCTCCTCTACCTCGGCACGGTGGCCAACTCCGTCAACCCCGCAACGGACTCCATCTCCAGCCACGACGATGACGATTTCCGGCCACCGTATCACAAACTCAACGACTCGCCGGAGCTCAACCCGCTGCCACCACTCCCGCGTCACAAATTCAATCCATGGATGAGTgaagtaaacgatgataaagaaataaaagaaccaaatgatgatgaagaagaagtagaagaagaggaagaagaGTTTTTCTCTCCAAGAGGTTCTTCTGAAGAAAAAGAAAACAAACAACAACACAGtcctccacctccttctccttctactcttcTCAATGCTGGTGCCGCTTCAACCTCACGTGTGTTTCACGTGGATCAATTCGTTTCCACAACCTTCACTTCGTACCCTCGTTCCAATTCCCTCTCTTCTCTCAATTGCAGCCCCACTAGCGTCAAATCGTTGCCTCTTAACAACCCCGcttctccttctttctcttcctcttcttctCCCCGGGAGGAATGGCAGGGAAAGACTTCTCCGGCGACAAATTTAcctcctccgccgccgccaccgccgccacctccgGTGCGGTTTTGGGAGACCTCGCCAAGTGTTGGTGTTAGGAGTGAGAGTGAGGACACCCCAAAGCCAAAGTTGAAAGCTTTGCATTGGGATAAAGTTAAGGCTAGTTCCGACAGGGTCATGGTTTGGGATCGCTTGAGACCCAATTCTTTTCAGTTGAACGAGGACATGATTGAAACGCTTTTTATGGCGAATAATTCTAAGGAGAGTTTTGGTGTTGCGACTAGAGACAACAATGCTAGGCGTCCAATACTTCATTCAGCTTCTCCCATGCCTCACGAAAATAGGGTGCTTGACCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTAGGGCGCTCAATGTCACTATTGACGAAGTTTGTGACGCCCTCAGGGAAGGCCATTGTGATACATTGGGAACGGAACTTCTTGAAAGCTTATTAAAGATGGCTCCAACTAAGGATGAAGAGTCTAAGCTGAAGGAGTTTCATGATGAGTCACCCTTCAAGCTTGGTCCTGCTGAGAAATTTCTTAAAGTCGTGCTTGATATACCTTTTGCGTTTAAGAGAGTGGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATACCTTAAGAAGTCCTTTGAAACTCTCGAGGAATATATATATGCTTCTCTCATTTCTCTCTCAATTTGA 1737 0.4047 MSSTFITLLVLCLFLGSCLAQPRRVLHQPLFPRVATPPTQPPQPQPQPRHHQHTQPKLPFSSSSSSSPPPHKSFFPSPSFRSPPLPPPPPVATTFPANISSLLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDSLRLFPPSDAAETKPPATELLYLGTVANSVNPATDSISSHDDDDFRPPYHKLNDSPELNPLPPLPRHKFNPWMSEVNDDKEIKEPNDDEEEVEEEEEEFFSPRGSSEEKENKQQHSPPPPSPSTLLNAGAASTSRVFHVDQFVSTTFTSYPRSNSLSSLNCSPTSVKSLPLNNPASPSFSSSSSPREEWQGKTSPATNLPPPPPPPPPPPVRFWETSPSVGVRSESEDTPKPKLKALHWDKVKASSDRVMVWDRLRPNSFQLNEDMIETLFMANNSKESFGVATRDNNARRPILHSASPMPHENRVLDPKKSQNIAILLRALNVTIDEVCDALREGHCDTLGTELLESLLKMAPTKDEESKLKEFHDESPFKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLKKSFETLEEYIYASLISLSI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00890 578 MobiDBLite consensus disorder prediction 34 49 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 71 94 - -
Cca01g00890 578 Gene3D Formin, FH2 domain 370 572 IPR042201 -
Cca01g00890 578 MobiDBLite consensus disorder prediction 186 200 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 140 166 - -
Cca01g00890 578 SUPERFAMILY Formin homology 2 domain (FH2 domain) 349 567 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 31 94 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 179 281 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 50 70 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 345 363 - -
Cca01g00890 578 MobiDBLite consensus disorder prediction 231 250 - -
Cca01g00890 578 PANTHER FORMIN-RELATED 7 566 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca01g00890 578 MobiDBLite consensus disorder prediction 297 378 - -
Cca01g00890 578 Pfam Formin Homology 2 Domain 375 567 IPR015425 -
Cca01g00890 578 ProSiteProfiles Formin homology-2 (FH2) domain profile. 373 578 IPR015425 -
Cca01g00890 578 MobiDBLite consensus disorder prediction 297 344 - -
Cca01g00890 578 PANTHER FORMIN-LIKE PROTEIN 2 7 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00890 Cca-Chr1 12329977 12332612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00890 344 566 FH2 protein (formin) Gene Family AT3G25500 64.317 9.18e-81 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00890 - - gmx:100786203 545.043