Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00889 ATGTTTCTGAAGATACTTGAAGCAGTGCTGAGAACAGGAAATCGAATGAATGTTGGAACCAATCGTGGTGATGCTCATGCGTTCAAACTGGACACACTTTTGAAGCTAGTTGATATTAAAGGAACTGATGGAAAAACTAGTCTCTTGCATTTTGTTGTACAGGAAATTGTCAGAACCGAGGGTTCTCATATATCTGATTCAAATCATCACCATACCTCTGATAATACCCACCAATATACACTTCAAGATGAGGTTGACTTCAAAAAGCTTGGACTGCAAGTTGTTTCAGGCTTGAGTGGGGAGCTCACCAATGTTAAAAAAGCAGCTGCTATGGATTCAGACACGCTGAGTTGTGATGTTGCTAAACTTGCCAGAGGAATTGAAAAAGTTGTGCAAGTTGTAAAATTGAACGAGGAGTCACCTTTGAAAGACACCAACCAAAACTTTTTTGATGCAATGAAAGGTTTCTTGAAGAGGGGAGAGCAAGAGATTTTAGCAATCCAGGCCCATGAGAAAAATGCCCTCTCTTCAGTAAAGGAGATAACCGAGTATTTCCATGGAAATTCAGCAAAGGAAGAAGCTCATCCATTTAGAATTTTTATGGTTGTGAGGGATTTCCTTTCAATACTAGATGGTGTTTGCAAGGAAGTTGGTAAAGTAAATGAGAGGACTTTGGTTGGTTCCCGTCAATCTGTAATGCCTGCAATTCCTATAATGCCAACCTTTTTCCCTGAGATTATTATTGGTTCAAGTAGTTTGTACACGTTTGGCCATTGA 777 0.3964 MFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTSLLHFVVQEIVRTEGSHISDSNHHHTSDNTHQYTLQDEVDFKKLGLQVVSGLSGELTNVKKAAAMDSDTLSCDVAKLARGIEKVVQVVKLNEESPLKDTNQNFFDAMKGFLKRGEQEILAIQAHEKNALSSVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRQSVMPAIPIMPTFFPEIIIGSSSLYTFGH 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00889 258 PANTHER FORMIN-LIKE PROTEIN 2 1 247 - -
Cca01g00889 258 Pfam Formin Homology 2 Domain 1 210 IPR015425 -
Cca01g00889 258 PANTHER FORMIN-RELATED 1 247 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca01g00889 258 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 236 IPR015425 -
Cca01g00889 258 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1 223 - -
Cca01g00889 258 Gene3D Formin, FH2 domain 1 233 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00889 Cca-Chr1 12328638 12329482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00889 1 247 FH2 protein (formin) Gene Family AT3G25500 60.887 2.93e-97 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00889 - - gmx:100815532 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00889 01 12328638 12329482 Cca01g00889 01 12328638 12329482 ECH