Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00887 ATGGTTTACTCCTATGACAAAACCTCTTCTTCTGGCTCTGATGTTTCGGGGTTGTTCAATCCCACTTTGCATAATCTTGGTGCTTCCAATGGTGTTTTGAGGGGTGGCTTGTCATCACCACATTCTTTGGTTTATGAGAGTGACAAGGGAGAGCTGGTGAAGTGCCCTTCAACTGCAAAGGTGGGAAAGAATGAGATTTGTGAGGCCAAAGCTTTAGCTGCTTTGAAGAACCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATTAATGGCCATCTTGCAACACTACGTGGCCTTGTGCCATCCACTGAAAAGATGGACAAAGCCACTTTATTGGCTCAAGTTATTAGCCAAGTGAAGGAATTGAAGAAAAATGCAGTGGAAGCAAGCAAGGGTTTGCTAATCCCTATGGATGCTGATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGGAAATGGATCCATGTTTTACAGTGCAACTATATGCTGTGATTTCCAACCTGAGATACTATCTGACCTAAGAAAGACCCTTGATTCCCTTCCAATACATCTAGTGAAGGCAGAGATTTCAACTTTGGCAGGTAGAATGAAGAATGTGTTTGTCTTTACATGTTGCAAAGGGACCAACATTCATATTGAGGCATGCCATGCTCTAGCTAGTACTGTTCACCAGGCACTATGTTCTGTACTGGAGAAGGCTGCTGCCTCACTGGAGTTCTCACCAAGAACATCACATGCAAGCAAGAGGAGAAGACTCTGCTTCATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTTGTGTTGA 813 0.4379 MVYSYDKTSSSGSDVSGLFNPTLHNLGASNGVLRGGLSSPHSLVYESDKGELVKCPSTAKVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAQVISQVKELKKNAVEASKGLLIPMDADEVKVEPYDDEGGNGSMFYSATICCDFQPEILSDLRKTLDSLPIHLVKAEISTLAGRMKNVFVFTCCKGTNIHIEACHALASTVHQALCSVLEKAAASLEFSPRTSHASKRRRLCFIETSTSSCNHGSCLC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00887 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Cca01g00887 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 125 IPR036638 GO:0046983
Cca01g00887 270 Gene3D - 70 131 IPR036638 GO:0046983
Cca01g00887 270 PANTHER TRANSCRIPTION FACTOR BHLH30 3 263 IPR045847 GO:0003700|GO:0006355
Cca01g00887 270 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Cca01g00887 270 CDD ACT_UUR-ACR-like 161 227 - -
Cca01g00887 270 SMART finulus 79 128 IPR011598 GO:0046983
Cca01g00887 270 PANTHER DNA BINDING PROTEIN-LIKE 3 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00887 Cca-Chr1 12293521 12297669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00887 70 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.765 3.40e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g00887 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00887 - - gmx:100804756 480.715