Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00886 ATGCAAGGTGATATCAGAGATCTTAAGGAGGCGGTAGAGTACTTAAAACAACGAGATGTTGAGCATTCGTTACAGAGCCAACAACAAACTGCTGCACTTCATGAGCTGAAAGAGATGCTTCAGGCTCTGACTACCGGATCTCCAACCAACACAATTGTTCATCCTCAATGGACCAAACCACcgtttcaggtaaggaacgttaaaattgactttcctcgACATTCTCAACTCAAGCTAAGTTTTGATACCAAACAAACATGTTTGGAATCCCTCTCCAACATCTCAACCGTGTTAGAGAATGCAGGGCCTTTGATTTCAAATGGGGTTGTACCTATTCTCTTGGAACTGTCCTCAACGAAGAGAACTTCAGAGAAAGCACTCGCCATCCTTGGAAACTTGGCAATGACTTTAGTGGGAAAGAAAGCTATAGAGAATAGCTCAATGGTGCCAAAAAGCTTGATTGAGATCTTATTTTGGGAAGATGAACCAAAATGCCAAGAGTTGTCAGCTTATGTTTTGATTATTGTAGCTCATAAAAGCACAAGACAGAGAGATAAAATGGCACAATCAGGGATTGTACATGTGCTTCTTGAAGTGGCTTTATTAGGGAGTTCTTTAGCTCAGAAGAGAGCACTGAAATTATTGCAATGGTTTAAGGATGATAGGCAAAGAAGGATGGGGCCACATTCAGGCCCACAAAGTTCAAGAAATGCTAAGGAATTGCTTGTGAACCAAAGGGATACAAAAGAAGGGAAGAGAATGATGAAGAATTTAGTGAAAGAAAGCTTGCATAGAAATATGGAAATAATAACTAAAAGAGCAAATGCAAGTGGGGATTCTTCGAATAAGCTCAAGTCCCTAGTTATCAGCACAAGCTCCAAAAGTTTGCTCTGCTAA 897 0.388 MQGDIRDLKEAVEYLKQRDVEHSLQSQQQTAALHELKEMLQALTTGSPTNTIVHPQWTKPPFQVRNVKIDFPRHSQLKLSFDTKQTCLESLSNISTVLENAGPLISNGVVPILLELSSTKRTSEKALAILGNLAMTLVGKKAIENSSMVPKSLIEILFWEDEPKCQELSAYVLIIVAHKSTRQRDKMAQSGIVHVLLEVALLGSSLAQKRALKLLQWFKDDRQRRMGPHSGPQSSRNAKELLVNQRDTKEGKRMMKNLVKESLHRNMEIITKRANASGDSSNKLKSLVISTSSKSLLC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00886 298 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 79 298 - -
Cca01g00886 298 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 79 298 - -
Cca01g00886 298 SUPERFAMILY ARM repeat 81 218 IPR016024 -
Cca01g00886 298 Gene3D - 13 225 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00886 Cca-Chr1 12279703 12282400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00886 84 227 U-box Gene Family AT1G71020 28.571 3.43e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00886 - - gmx:100816066 324.709