Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00885 ATGGACTTCTCCAACGCCAAGAAGCGCAAAGTGGAAGAGAACGGCGACGCCGATTCTccgccgccgcagtcccgcgacgaagccacggtctccgccgccgccACTCTCTCCGCGGAAGACATACGCAAAATCCTCCAACCCTTATCCTCGGACCAACTCGTCGACCTCCTCCAATCGGCGTCGCTCCGCCACCCCGACGTCCTCGACGCCGTGCGCGCCGTCGCGGACCGCGACTCCACCTCCCGGAAGCTCTTCGTGCGCGGCCTCGCCGGGGAGACCACCACCGAGACGCTGCGCGGCGTGTTTTCCGCGTACGGCGACCTCGACGAGGCCATAGTCATTTTCGACAAGGCCACTGGGCGCTCCAAGGGCTACGGCTTCGTGGTGTTTCGCCACGTGGATGGTGCTATCCTTGCGCTGAAGGATCCCAGCAAGAAGATTGATGGCCGCATGACGGTGACGCAGCTCGCCGCCGCCGGCGGTCCCGGTGGCTCCGGCGATGTCTCCCTGAGGAAGGTCTTTGTAGGGAACGTCCCCTTTGAACTTTCCTCGGAGCGTCTTCTGGACGAGTTCCTCAAGTTTGGGGAAGTGGAGGAAGGGCCTCTAGGGTTCGACAAATCTAGCGGCAAAACCAAGGGTTTTGCCTTCTTTGTTTACAAGACAGAGGAGGGTGCTCGAGCTTCACTGGTGGAACCTCTTAAGACCATTGATGGGCATCAAGTCATATGCAAGTTGGCTGTGGATAACAAAAAGGCGAAACCCTTTGGTGGGGatcagcatcagcatcaacagcaacagcaaaatcaacatcagcatcagcagcaacaggtgccgcaggtgcaacagcaaGGGCCTGTGGTGCAGTATGGTGGGTATGGCGTGAACGGCTACGGGATGCAGCACTCGGTGGCATCGTATAATAACCAGGCTCCGGTTGGTGGATATGGCCATGTTGGTGCAGCGTATGGGAATGCACAGATGAGTGGGCCTGTCTCTTCTGGTGACTATGGTGGGAGAGTGCCTCCCAATTCTGCTGGCGGGTTTCCTGATGGCTCGCAGTATGGCTTTCCTCCTCCCTCAGCGTTACAACCACAGCAACAACAAATTATGCCAATGGCGAGACCTCCTCCAACTGGAATGTACCAACAGCCCTATTATTGA 1161 0.5168 MDFSNAKKRKVEENGDADSPPPQSRDEATVSAAATLSAEDIRKILQPLSSDQLVDLLQSASLRHPDVLDAVRAVADRDSTSRKLFVRGLAGETTTETLRGVFSAYGDLDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSLRKVFVGNVPFELSSERLLDEFLKFGEVEEGPLGFDKSSGKTKGFAFFVYKTEEGARASLVEPLKTIDGHQVICKLAVDNKKAKPFGGDQHQHQQQQQNQHQHQQQQVPQVQQQGPVVQYGGYGVNGYGMQHSVASYNNQAPVGGYGHVGAAYGNAQMSGPVSSGDYGGRVPPNSAGGFPDGSQYGFPPPSALQPQQQQIMPMARPPPTGMYQQPYY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00885 386 MobiDBLite consensus disorder prediction 258 282 - -
Cca01g00885 386 MobiDBLite consensus disorder prediction 333 386 - -
Cca01g00885 386 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g00885 386 SMART rrm1_1 83 155 IPR000504 GO:0003723
Cca01g00885 386 SMART rrm1_1 172 244 IPR000504 GO:0003723
Cca01g00885 386 MobiDBLite consensus disorder prediction 252 282 - -
Cca01g00885 386 Gene3D - 169 282 IPR012677 -
Cca01g00885 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 159 IPR000504 GO:0003723
Cca01g00885 386 CDD RRM_RBM24_RBM38_like 82 156 - -
Cca01g00885 386 Gene3D - 6 168 IPR012677 -
Cca01g00885 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 253 IPR000504 GO:0003723
Cca01g00885 386 SUPERFAMILY RNA-binding domain, RBD 75 161 IPR035979 GO:0003676
Cca01g00885 386 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 2 356 - -
Cca01g00885 386 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g00885 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 236 IPR000504 GO:0003723
Cca01g00885 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 150 IPR000504 GO:0003723
Cca01g00885 386 PANTHER GEO13361P1-RELATED 2 356 - -
Cca01g00885 386 SUPERFAMILY RNA-binding domain, RBD 168 263 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00885 Cca-Chr1 12272353 12276350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00885 154 246 C2H2 Transcription Factor Family AT2G19380 33.333 4.67e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00885 K12741 - gmx:100816590 519.235