Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00867 ATGGGTTCAGGTGATTGGTTTAAGACGATAATTAGCTTAAGAAAATCAAAAGAAGGCAGATCGAAGAAAGTAAAGACTAAGAATTATAGAGGAAAAAGGTCAAATGGTTTAGCAAATGGCAGTAAAAGTGAAAATCAAGTGTCTGATGGGGTATCAGTTGAAACTATTGCTGCAACAAGGATCCAAACAGCATTCCGGGCTTATAAGGCTAGAAAATATTTACGTCGCTTGAAAGGATTCACAAAACTGAAGATCCAGACTCAAGGTTGCTCTGTTCAAAAACAAGCCATTACAACTATAACTTATCTTCATTCATGGAGCAAGATACAAGCTGAGATTAGAGCTCGCCGCATATGTATGGTGACAGAAGACAGGATCAGGAGGAAGAAACTACATTCTCAACTAAAACTTGAGGCCAAGATTCATGACCTGGAGGTGGAATGGTGTGGTGGTTCTGAAACCATGGAGGAAATCCTTGCAAGGTTACATCTGAGAGAAGAAGCAGCAGTCAAGAGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGTGGAGGGCCAACTCTAGCCAAGGTCTAGGAAATTATGAACTTGGCAAAGCTAGTTGGAGTTGGAGCTGGAAGGACCGTTGGATTGCTGCACGCCCTTGGGAAAGCCGTGTCACCAGTGTAACCACTAGCCCTAGGATAGATGAAAACAGGAAGCCAAGTAAAGTTGAGAAGGATAAGAAGTCATCAAAAAAACAAGCAGTTTCAATCAAACCTCCTTCTGCTAAAGCTAAAGGGACTAAACCCTTAGGTAATGCAAAAGGGACTACTAAAGCTAGAAGAAGCATCGGAGGATCTCAGAGGCTCTTGGCGTTGGTGCAGCACCTTCGCCAGTACAAGGCACCGTCTTTCCCTGAAGATACTGTGGAGCAGAGCATTGAGGAAAGTGATGGCAAGGTTGTTTCCCAGGTGGGTTTTCCAGAATCAGCCACCCCAATTGGCCAAAGCTCTGAAAAATTCAGACCTAACAGAGCTGGTGTTTTGATCTGCCTCTTCGAAGGGGATGATGGGGATCTAAGGGTCATTCTCACTAAGCGCTCCTCCAAGCTCTCTACTCACCCGGGTGAGGTGGCATTGCCTGGTGGGAAAGCGGAGGAGGGGGATAAGGATGATGGGGACACTGCAAAAAGAGAGGCACAGGAGGAAATTGGGTTGGACCCGGAACTTGTCAATGTTGTTACTGTTCTTGAGCCATTCTTGTCTAAGCACTTCCTAAGAGTAGTTCCAGTCATTGGCATACTTCATGACAAGAAAGCATTCAAACCTGTTCTAGAACCAGGTGAAGTGGAAGCAGTATTTGATGCACCTTTGGAAATGTTTCTCAAGGATGAAAATCGAAGAGAGGAGGAGAGGGAGTGGATGGGAGAGAAGTTTTTGGTGCATTTCTTTGACTATGGCATCGGGAATAAAAAATACCTCATATGGGGTTTAACTGCTAGCATCTTAATTAGGGCTGCGTCTGTTGTGTACAAAAGGCCACCAGCTTTCGTTGAGCAGAATCCTGAATTCAAGATTCCACAAGAAGTATCCAAAGATACTGTAATGCGTTGA 1596 0.4449 MGSGDWFKTIISLRKSKEGRSKKVKTKNYRGKRSNGLANGSKSENQVSDGVSVETIAATRIQTAFRAYKARKYLRRLKGFTKLKIQTQGCSVQKQAITTITYLHSWSKIQAEIRARRICMVTEDRIRRKKLHSQLKLEAKIHDLEVEWCGGSETMEEILARLHLREEAAVKRERTMAYAFSHQWRANSSQGLGNYELGKASWSWSWKDRWIAARPWESRVTSVTTSPRIDENRKPSKVEKDKKSSKKQAVSIKPPSAKAKGTKPLGNAKGTTKARRSIGGSQRLLALVQHLRQYKAPSFPEDTVEQSIEESDGKVVSQVGFPESATPIGQSSEKFRPNRAGVLICLFEGDDGDLRVILTKRSSKLSTHPGEVALPGGKAEEGDKDDGDTAKREAQEEIGLDPELVNVVTVLEPFLSKHFLRVVPVIGILHDKKAFKPVLEPGEVEAVFDAPLEMFLKDENRREEEREWMGEKFLVHFFDYGIGNKKYLIWGLTASILIRAASVVYKRPPAFVEQNPEFKIPQEVSKDTVMR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00867 531 CDD CoAse 339 498 IPR045121 GO:0010945
Cca01g00867 531 MobiDBLite consensus disorder prediction 367 396 - -
Cca01g00867 531 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 276 334 - -
Cca01g00867 531 PANTHER NUDIX HYDROLASE 336 517 IPR045121 GO:0010945
Cca01g00867 531 SUPERFAMILY Nudix 335 497 IPR015797 -
Cca01g00867 531 MobiDBLite consensus disorder prediction 18 45 - -
Cca01g00867 531 ProSiteProfiles IQ motif profile. 54 82 IPR000048 GO:0005515
Cca01g00867 531 ProSiteProfiles Nudix hydrolase domain profile. 337 493 IPR000086 -
Cca01g00867 531 PANTHER NUDIX HYDROLASE 276 334 IPR045121 GO:0010945
Cca01g00867 531 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 324 502 - -
Cca01g00867 531 MobiDBLite consensus disorder prediction 221 278 - -
Cca01g00867 531 Pfam NUDIX domain 338 457 IPR000086 -
Cca01g00867 531 MobiDBLite consensus disorder prediction 230 248 - -
Cca01g00867 531 MobiDBLite consensus disorder prediction 377 396 - -
Cca01g00867 531 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 336 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00867 Cca-Chr1 12040123 12059893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00867 1 276 IQD Protein Family AT2G33990 52.347 3.19e-82 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00867 - - gmx:100802963 455.292