Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00865 ATGATTAAAACAAATCATGAACTTATTCTAAAGCATGATAATGGGTCATCCCAATATGATAGAGGATATGAAATATTCTCTTTGCTATTGATCGAACTCCATGATAAGATCTTCACTATCTCCAACATCTTAGACAGATCTTCGGCTTTTCTCGAACTCCCTTATGAAAAAGTTTATATCAGTGAACACTGCACAGGGTACTCTGCCTCTGTACCTACCGTCAAATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCTCCAGTGGCTAGAGATGTTTCTAAAGCTATACTGCAGCTCTTAGAGCTGGGAGAATTGAAGAAGTTAGAAGACAAATGGTTGAACCATCCAGGTGCGTGCTCCAACAAATCCACCTCCGAAAGTACAGAAAGTTTGAGGCTTGGAAGCTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTCCTACTTTATACTATCCAGCTGAAATATAGTCAAACATCCCAAGATGAGGTACAAGAACAACGTAATGACAACTCAGGTGCTCAAAGCCCATGGAAAAAGGTAGTGATAATTGTTAAGCAGATTTACAGCAGAAAGTATGCACCACAGACAACCATACAAAATCAGGCAATGGCTCCATAA 636 0.3994 MIKTNHELILKHDNGSSQYDRGYEIFSLLLIELHDKIFTISNILDRSSAFLELPYEKVYISEHCTGYSASVPTVKFGGLGFMFQKGSPVARDVSKAILQLLELGELKKLEDKWLNHPGACSNKSTSESTESLRLGSFWVLYVISGATSTICFLLYTIQLKYSQTSQDEVQEQRNDNSGAQSPWKKVVIIVKQIYSRKYAPQTTIQNQAMAP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00865 211 PANTHER GLUTAMATE RECEPTOR 3.4 47 199 - -
Cca01g00865 211 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 199 - -
Cca01g00865 211 SUPERFAMILY Periplasmic binding protein-like II 49 120 - -
Cca01g00865 211 Gene3D - 60 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00865 Cca-Chr1 12009262 12011780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00865 47 161 Ion Channels AT2G29110 36.522 1.16e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00865 - - ccaj:109795316 317.39