Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00862 ATGGCTATTCAGGCATCTTCTGAAGAGATTCTAGAGAATGTGTGGGCTAAAATTATGAGCAGTGACAGAAGAGGTGATGCATCAGTAGATTCTCCTCACTCTTTGGAAGAACAGCCTAACCCTGATGGAAGAGAAGGGTCAATGGAAATTCTGAAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGGGCTGATTTCTGGGAACAAAGTTTATATAGTATTCTAACTGCTGCAACCAATACAGAAGATTCTGGTGACACCATTATGGGAATTGGCACTGCTACTAGACACAAAAACAAGGTGGAAGCTGATGGTGTGAGAGGAGAAAAGGTGGTAGCAAAACACTATAGGGGAGTAAGGAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGATTCATCAAAGAAAGGTGCTAGAGTTTGGCTTGGCACATTTGAAACTGCTGAAGAAGCAGCTCTGGCTTATGACAAGGCTGCTTTGAGAATTAGGGGTCCAAAAGCATACCTCAACTTTCCACTTGAGACAGTTGTTGTTGCACAGGCTTCAGAAACAGGTCAGAAAGGAGCAGGTTGGGACACAGAAAAGAGTTACAATGGCATGAAGAAGAGAAAGGAAGGGTTTGTGGATGTGGTGAATGAAGAACCTGTAACCAAAAAAATGGCAAGAGGATGCAGCATTTTCCTAATTCACCAGAAACGGAAAATAAGCAAAAGCGGGAAAATGGAGAACCCTAGCAGTAGTGAAAGATGGAACAGAGCAGGGATCGATGATAGCATGCTGGCCATGTTCGATGCCTCCGAAACCAAGGATGCTCATCAAGATGCCCTCGATGATCGGATTACTTTTCTTGATGCTGTTCGTGCTTCTTCAATTGTGCCTGAACATGGAAAACCACCCACTTCAAAAATTTATGGGGCGATCTTCCACATGCTGAGGACAGGGAAGTCTTTAGAGTTGATTGTGGGAAGTTATAAGCTTCTAGTTGACTTAGACAAGCGCTTCCCTCGTGTGTATTTATCTGGCACGGATGATTCCAGGTCGTCATCTAACTCTTCATCAAAATTGGTTGTGGTTAAAGAGGCATGGTCTCCCATCATTGATTGCCCGGATAATGCTCATGCTGTTGGTGAAGCAGGTGACAAACGGTCTGGTGAACCTCTTGACCCCTCTAGCTTTCACGTCCTGATTGAAGAGCTCACTGAAATTTTTTCTGAGACCAAATTTCAAGCAGCAAGCATCGAGCCCTTGAGGAACATGTTACTCTTTCAGTACCTTGTCATTGTTTTTGAGGATGATTTTCTACCTCGCAATGCAACTTTGAACTGGAGCATGCAGAGGGAGTCTTTGCTCAGCCTGCTACTGGGATCTAGGAAAATAAATTACAAAGGCTTGATGAAGGATTGCATGGCAATTATTTGTCAACTATCTCAAATTCTTCAAAGTGAACTCAGTAATCATTTGGAGCTTCAAGAAAGTTCTGAATCTAAGTTATCCAAAAATTGTCATAGTGCATTGTCTCTTGCTTTACTCGGGGTTTTAAAGGACACGTGTGTCTCAATTGAGAAACTTTTAGTGATGATTATGGATCTTGACATGGCAAGGAAGAAAGCAAATATTGAAGGTCACACTACGAGAGCGGACAGTCCAAGAACACCCTTGATCGACATAATTCTGGATGAACTAGCTTACTACAAAGATAGTGTCCCTGTTTTTCTTAAGATCTTCAGTGAACCTAAATGGAAGCTGGAAATAGTTGTGCAATATCTGTGGAAATACATAACCAAGCCTTCTGTTCGCACTCGTAAGTCAAATGATTATACCGAAGATTCAACATTTGTTGGGGCTTTGAAGTGCTTTTCAAATAAAACTAGCACTAAGAGCTTAATAAAAAAAATTGGTGTAGATGTAGTTCAATTCCTTCTGGCTCATGGTTTTCAGGCTCAATTGTCAATATTGTCAAAAGGAAATGCTGATGACAACATTGCTGGTAACAAAGAAGGGGGAGTCAGTGCTCTTGTGGATTTGTGTCATACTTTCATCTCTGCTTTTGATAATTTGAGAAGCACGGATGAGCATATGGAGATATTATCAATAGGAAAAGAGGCACTATTTACTGCAGCAACTATTATCTCCATGAAATCATAG 2151 0.4156 MAIQASSEEILENVWAKIMSSDRRGDASVDSPHSLEEQPNPDGREGSMEILKRLPSLGRWISMGADFWEQSLYSILTAATNTEDSGDTIMGIGTATRHKNKVEADGVRGEKVVAKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLETVVVAQASETGQKGAGWDTEKSYNGMKKRKEGFVDVVNEEPVTKKMARGCSIFLIHQKRKISKSGKMENPSSSERWNRAGIDDSMLAMFDASETKDAHQDALDDRITFLDAVRASSIVPEHGKPPTSKIYGAIFHMLRTGKSLELIVGSYKLLVDLDKRFPRVYLSGTDDSRSSSNSSSKLVVVKEAWSPIIDCPDNAHAVGEAGDKRSGEPLDPSSFHVLIEELTEIFSETKFQAASIEPLRNMLLFQYLVIVFEDDFLPRNATLNWSMQRESLLSLLLGSRKINYKGLMKDCMAIICQLSQILQSELSNHLELQESSESKLSKNCHSALSLALLGVLKDTCVSIEKLLVMIMDLDMARKKANIEGHTTRADSPRTPLIDIILDELAYYKDSVPVFLKIFSEPKWKLEIVVQYLWKYITKPSVRTRKSNDYTEDSTFVGALKCFSNKTSTKSLIKKIGVDVVQFLLAHGFQAQLSILSKGNADDNIAGNKEGGVSALVDLCHTFISAFDNLRSTDEHMEILSIGKEALFTAATIISMKS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00862 716 MobiDBLite consensus disorder prediction 23 47 - -
Cca01g00862 716 Gene3D AP2/ERF domain 115 176 IPR036955 GO:0003700|GO:0006355
Cca01g00862 716 PANTHER NEGATIVE REGULATOR OF SYSTEMIC ACQUIRED RESISTANCE SNI1 243 715 IPR034561 GO:0005634|GO:0006974|GO:0030915|GO:0031348|GO:0045892
Cca01g00862 716 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Cca01g00862 716 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Cca01g00862 716 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Cca01g00862 716 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Cca01g00862 716 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Cca01g00862 716 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Cca01g00862 716 SUPERFAMILY DNA-binding domain 116 176 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00862 Cca-Chr1 11972298 11983623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00862 3 181 AP2-EREBP Transcription Factor Family AT4G18450 42.246 2.11e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g00862 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00862 - - ccaj:109790934 890.567