Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00861 ATGCCTATCATGAGAGCCTCTAATTCACATTCCTTTCTCTCTCATGCACACCTTTTCGTGCTTTGCTTGCTACTATTTGTGGTCACAATTCAAGCTTCCAAAAAGAGAGCCTCAGCCATGTATGTGTTTGGAGACTCCACAGTAGACCCAGGAAACAACAACTTCATAAAAACAGCTTTCAGAAGCGATTTTCCACCCTACGGTAGAGATTTTCTTAACCAAGCTCCCACCGGAAGGTTCACCAACGGCAAACTTGGCACTGATTTTATTGCTTCATATTTAGGCCTAAAAGATTTGTTGCCACCATATTTGGATCCAAATCTCAGCGACGAAGAACTTGTAACGGGTGTCAGTTTTGCCTCTGCTGGTTCTGGCTTTGACCCACTAACTCCAATTCTGGGAAATGTAATTCCAATACCAAAGCAGTTGGAATATTTCAAAGCATACAAAAAGAGGATAGAGGGTGTGCTTGGTAAGCAAAGAACCGAAAATCATATAAAGAATGCAGTATTTTTCATCAGCGCGGGTACAAACGACTACGTCATTAATTATTTTCCGGTGCCAATACGAAGAGAAAGCTACACCACCTTAACCTACGGCCACTTCTTGCTTCAACATGTAAAAGATTTCATACAGAATTTATGGAGAGAAGGTGCTCGAAAAATAGCTGTGCTTGGACTACCTCCGATAGGATGCTTGCCGATCATGATCACCTTCAATTCCCATAATGTCTTTCTCGAACGTGGTTGTGTAGACAAGTATTCATCTGTTGCAAGAGATCACAATATGATGCTTCAACATGAATTGTTCTTCATGCAACTAAATTTCTCTAATCCTGCTGGTGCTAAAATCTCTTACATCGACACATATGGACCCTTGGACAACATGATTCAAGTGCGTCAAAATCTAGGTTTTGATGAGGTTGATCGCGGTTGTTGTGGAAGTGGTTACATCGAAGCGAGTTTTCTGTGTGATGGGATTTCGTATGTGTGCTCTGATCCATCAAAATTTGTCTTCTGGGATTCAATTCACCCTACGGAGAAGGCATATTATGACCTATTTTTGGCAGCCCGTCCCAAAATCGATGCCCTTATCAACGACTAA 1104 0.4167 MPIMRASNSHSFLSHAHLFVLCLLLFVVTIQASKKRASAMYVFGDSTVDPGNNNFIKTAFRSDFPPYGRDFLNQAPTGRFTNGKLGTDFIASYLGLKDLLPPYLDPNLSDEELVTGVSFASAGSGFDPLTPILGNVIPIPKQLEYFKAYKKRIEGVLGKQRTENHIKNAVFFISAGTNDYVINYFPVPIRRESYTTLTYGHFLLQHVKDFIQNLWREGARKIAVLGLPPIGCLPIMITFNSHNVFLERGCVDKYSSVARDHNMMLQHELFFMQLNFSNPAGAKISYIDTYGPLDNMIQVRQNLGFDEVDRGCCGSGYIEASFLCDGISYVCSDPSKFVFWDSIHPTEKAYYDLFLAARPKIDALIND 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00861 367 CDD SGNH_plant_lipase_like 39 350 IPR035669 -
Cca01g00861 367 Gene3D SGNH hydrolase 27 357 IPR036514 -
Cca01g00861 367 SUPERFAMILY SGNH hydrolase 165 353 - -
Cca01g00861 367 Pfam GDSL-like Lipase/Acylhydrolase 41 350 IPR001087 GO:0016788
Cca01g00861 367 PANTHER GDSL ESTERASE/LIPASE EXL3 9 365 - -
Cca01g00861 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 9 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00861 Cca-Chr1 11929503 11932400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00861 20 350 Pollen Coat Proteome AT1G75910 35.277 1.61e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00861 - - gmx:100804919 638.262