Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00858 | ATGTCTTCTTCCAACCGACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATCCCCACAACCAATGGCAAAATGACACCAACTCTTCTCTCTTGCCCAATGGATGTCAAAGAAGCCCTTATAATACAGCTGCAGAAGGTGAAGAGAGAAGTCCAGAACCAAAACCAAGATGGAATCCAAAACCTGAACAAATTCGCATTCTGGAAGCCATCTTCAACTCTGGGATGGTGAATCCCCCAAGGGATGAAATAAGGAGGATCAGGGTGCAGTTGCAAGAGTATGGCCAAGTGGGTGATGCAAATGTTTTCTACTGGTTCCAGAACCGTAAATCCAGAAGCAAACACAAGCTTCGCCACCTCCAAAACTCAAAGAACAAAAATGCTGAAGCACATCAAAACGCTGTTTCTCTCCCTCAAATGACACCACCTTCATCATCTTCTTCATCCTCAGAAAAATCCTCTCCTAAAAAATTTATGCATCCCAAGGGGTTCTCCTTTGGCTTCTCAAATGTCAACGATGCAGTGCCTAATTCTCCCACCACTTCAGTGAACCAGACTTATTTTCAGCCTTACCATCACAATGAAACCAATTTGCTACCACCAGCACCTGAGTCTTTCTCCTTCTTGGCACACAACAATGGACAATGTGTAGCAACTGATGCCATGTCAACCCTTGGATTTTCCTTCCCTGACTTCTCCAACAATATGATGCAATCTCAACATGTTGGACCTTGCACTAGTCTTTTGCTCAATGAGATCACTAATCATGAAACCTCTTCCAAGAAGGACCTAGATGAAGAGAAGGCTTTGAAGATAATGCACCAACACCCACAACACAATTTCTCTCTCACAACAACTCCACTTACAACGGTTGTTCATCCCAGCACCAGCACACCAATCTCTGCTCCATGCCCCATCAACCAATTTCAAGGTGTTGGTGATGGTGCAGCAGATAGGGCACAATGTACAGTGTTCTTCAACGACGTCGCATTTGAGGTTGCAGTGGGACCCTTCAACGTGCGACAAGCTTTCGGGGATGAGGCCATGCTTTTCTACTCTTCTGGCCATCCTGTTCCCACCAACGAGTGGGGTGTCACTCTTCACCCGCTGCAGCATGGAGCATACTATTATCTGGGACTGATTTAA | 1146 | 0.4572 | MSSSNRHWPSMFKSKPCNPHNQWQNDTNSSLLPNGCQRSPYNTAAEGEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNKNAEAHQNAVSLPQMTPPSSSSSSSEKSSPKKFMHPKGFSFGFSNVNDAVPNSPTTSVNQTYFQPYHHNETNLLPPAPESFSFLAHNNGQCVATDAMSTLGFSFPDFSNNMMQSQHVGPCTSLLLNEITNHETSSKKDLDEEKALKIMHQHPQHNFSLTTTPLTTVVHPSTSTPISAPCPINQFQGVGDGAADRAQCTVFFNDVAFEVAVGPFNVRQAFGDEAMLFYSSGHPVPTNEWGVTLHPLQHGAYYYLGLI | 381 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00858 | 381 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Cca01g00858 | 381 | ProSiteProfiles | 'Homeobox' domain profile. | 51 | 116 | IPR001356 | GO:0003677 | |
Cca01g00858 | 381 | PANTHER | WUSCHEL-RELATED HOMEOBOX 9 | 1 | 378 | - | - | |
Cca01g00858 | 381 | SUPERFAMILY | Homeodomain-like | 51 | 119 | IPR009057 | - | |
Cca01g00858 | 381 | CDD | homeodomain | 54 | 116 | IPR001356 | GO:0003677 | |
Cca01g00858 | 381 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
Cca01g00858 | 381 | MobiDBLite | consensus disorder prediction | 132 | 154 | - | - | |
Cca01g00858 | 381 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cca01g00858 | 381 | Gene3D | - | 55 | 121 | - | - | |
Cca01g00858 | 381 | PANTHER | WUSCHEL-RELATED HOMEOBOX 9 | 1 | 378 | IPR044557 | GO:0003700|GO:0050793 | |
Cca01g00858 | 381 | MobiDBLite | consensus disorder prediction | 132 | 157 | - | - | |
Cca01g00858 | 381 | Pfam | Homeodomain | 55 | 115 | IPR001356 | GO:0003677 | |
Cca01g00858 | 381 | SMART | HOX_1 | 53 | 120 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00858 | Cca-Chr1 | 11864813 | 11867249 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g00858 | 1 | 380 | Wox Gene Family | AT2G33880 | 45.652 | 1.07e-87 | 268 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-WOX | Cca01g00858 | Homeodomain | 2.8e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00858 | - | - | gmx:100777643 | 508.064 |