Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00858 ATGTCTTCTTCCAACCGACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATCCCCACAACCAATGGCAAAATGACACCAACTCTTCTCTCTTGCCCAATGGATGTCAAAGAAGCCCTTATAATACAGCTGCAGAAGGTGAAGAGAGAAGTCCAGAACCAAAACCAAGATGGAATCCAAAACCTGAACAAATTCGCATTCTGGAAGCCATCTTCAACTCTGGGATGGTGAATCCCCCAAGGGATGAAATAAGGAGGATCAGGGTGCAGTTGCAAGAGTATGGCCAAGTGGGTGATGCAAATGTTTTCTACTGGTTCCAGAACCGTAAATCCAGAAGCAAACACAAGCTTCGCCACCTCCAAAACTCAAAGAACAAAAATGCTGAAGCACATCAAAACGCTGTTTCTCTCCCTCAAATGACACCACCTTCATCATCTTCTTCATCCTCAGAAAAATCCTCTCCTAAAAAATTTATGCATCCCAAGGGGTTCTCCTTTGGCTTCTCAAATGTCAACGATGCAGTGCCTAATTCTCCCACCACTTCAGTGAACCAGACTTATTTTCAGCCTTACCATCACAATGAAACCAATTTGCTACCACCAGCACCTGAGTCTTTCTCCTTCTTGGCACACAACAATGGACAATGTGTAGCAACTGATGCCATGTCAACCCTTGGATTTTCCTTCCCTGACTTCTCCAACAATATGATGCAATCTCAACATGTTGGACCTTGCACTAGTCTTTTGCTCAATGAGATCACTAATCATGAAACCTCTTCCAAGAAGGACCTAGATGAAGAGAAGGCTTTGAAGATAATGCACCAACACCCACAACACAATTTCTCTCTCACAACAACTCCACTTACAACGGTTGTTCATCCCAGCACCAGCACACCAATCTCTGCTCCATGCCCCATCAACCAATTTCAAGGTGTTGGTGATGGTGCAGCAGATAGGGCACAATGTACAGTGTTCTTCAACGACGTCGCATTTGAGGTTGCAGTGGGACCCTTCAACGTGCGACAAGCTTTCGGGGATGAGGCCATGCTTTTCTACTCTTCTGGCCATCCTGTTCCCACCAACGAGTGGGGTGTCACTCTTCACCCGCTGCAGCATGGAGCATACTATTATCTGGGACTGATTTAA 1146 0.4572 MSSSNRHWPSMFKSKPCNPHNQWQNDTNSSLLPNGCQRSPYNTAAEGEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNKNAEAHQNAVSLPQMTPPSSSSSSSEKSSPKKFMHPKGFSFGFSNVNDAVPNSPTTSVNQTYFQPYHHNETNLLPPAPESFSFLAHNNGQCVATDAMSTLGFSFPDFSNNMMQSQHVGPCTSLLLNEITNHETSSKKDLDEEKALKIMHQHPQHNFSLTTTPLTTVVHPSTSTPISAPCPINQFQGVGDGAADRAQCTVFFNDVAFEVAVGPFNVRQAFGDEAMLFYSSGHPVPTNEWGVTLHPLQHGAYYYLGLI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00858 381 MobiDBLite consensus disorder prediction 1 62 - -
Cca01g00858 381 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Cca01g00858 381 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 - -
Cca01g00858 381 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Cca01g00858 381 CDD homeodomain 54 116 IPR001356 GO:0003677
Cca01g00858 381 MobiDBLite consensus disorder prediction 48 62 - -
Cca01g00858 381 MobiDBLite consensus disorder prediction 132 154 - -
Cca01g00858 381 MobiDBLite consensus disorder prediction 1 41 - -
Cca01g00858 381 Gene3D - 55 121 - -
Cca01g00858 381 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 IPR044557 GO:0003700|GO:0050793
Cca01g00858 381 MobiDBLite consensus disorder prediction 132 157 - -
Cca01g00858 381 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Cca01g00858 381 SMART HOX_1 53 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00858 Cca-Chr1 11864813 11867249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00858 1 380 Wox Gene Family AT2G33880 45.652 1.07e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca01g00858 Homeodomain 2.8e-14 CL0123