Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00849 ATGGCTGCCTTCATTGATCTCAACAGTGCCACCGAGGATGATGAAACGCCCTCGTCTGCTTCTGCTTCCGCTTCCGCTTCCTCCTCTGTGTGCTTGGAGCTCTGGCACGCCTGTGCGGGTCCCATGATTTCCCTGCCTAAGAAAGGGAGTCTTGTGGTTTACTTCCCGCAGGGACACGTGGAACAATTTCGCCACTTTTCGCTTCCTGTATCTGCGAACATCCCCTCCCATGTCTTCTGTCGTGTCCTCCATGTCAACCTTAACGCCGAGGAAGGGAGCGATGAAGTGTACTGCCAGGTGGTGTTGGTTCCCGAAACTGAGCAAGTGCAGCAGAAGTTACGGGAAGAGGGAATGAATGCTGCTGGTGAAGAGGAGGATGCTGAAGCTGGGATGAAGTCCACCACTCCACACATGTTCTGCAAGACTCTCACTGCTTCCGATACTAGCACTCATGGGGGATTCTCCGTGCCTCGTCGTGCTGCCGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCAAAGGATCTGCATGGCCAGGAATGGAGGTTTCGTCATATTTACAGGGGGCAGCCACGAAGGCACTTGCTTACTACCGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTCCTTTTTCTTAGGGGTGAAGATGGCGAACTGAGGTTGGGAATTCGTAGGGCTGCTCAATTGAAAAGTGGCATTACCTTTTCATCTCTTCCCTGCCAGCAACTGAATCTTGGCAGTCTTGTAGAAGTGGTTAATGCTTTATCCACAAGATGTGCCTTTACCATCCATTATAATCCAAGGGTCAGCTCATCTGAGTTCATCATACCTATCCACAAATTTTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATACTGCAGAGCGGAGATTCACAGGATTAATTGTTGGAATTACTGATGTGGATCCTGTCAGATGGCCTGGATCGAAATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCCGCCAGGTATAATAGGGTTTCCCCATGGGAGATTGAGCCATTTGGTTCTGCTTCTACAGCGAATAACTTGATGTCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGAATTTCCAGTTCCCAATGCAATTGGAACATCAGACTTTGGGGAATCACTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTACTTTTGATAGTATTAATGCTCAGAGTCACCAGCTATCTGATTTGAGGAGGTGCTATCCAGGCTCAATCTGTTCTAGGATTGCTGCAACAGGAAATAGCATTGGAATCCCCCAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGAAGGGCCCTATCTGTTGATGAGGCTTGTGGTAATGGTCGCTTTGGACTTTTTGATGGTTACCAAGCGCTGAGATCCAGAAATGGATGGTCTTCCCATATGAGTAACAAATCTTCACATTTGCATTCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAAAGTTCCAGCAAGCTGTCAATCCAGTTTCAAACTCAGATTATATCAACAAAGTTAGTCAGGTGATGGAAGTACTGAGAACCAGTCAAGAGTTGGTTCCCTCATGTAAAAGTAGATGCAGAGTCTTTGGCTTTTCATTAACTGAGGCTATTGCAAACAAAGAGGCTATTGACCCATCTGCAGAGCAAGGCAGTGGGAAGTTATTGCACCAAAGGCGTGCAACGTGCTGCAGTATTGATCTGAAAATCATGATGTATACTAGTAGTGACTCTGGCATAAGGTCCTTTTAA 1959 0.463 MAAFIDLNSATEDDETPSSASASASASSSVCLELWHACAGPMISLPKKGSLVVYFPQGHVEQFRHFSLPVSANIPSHVFCRVLHVNLNAEEGSDEVYCQVVLVPETEQVQQKLREEGMNAAGEEEDAEAGMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGITFSSLPCQQLNLGSLVEVVNALSTRCAFTIHYNPRVSSSEFIIPIHKFLKSLDYSYSVGMRFRMRFETEDTAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEAARYNRVSPWEIEPFGSASTANNLMSAGLKRTKIGLPSAKLEFPVPNAIGTSDFGESLRFQKVLQGQEILGVNTTFDSINAQSHQLSDLRRCYPGSICSRIAATGNSIGIPQVSSNVSCNGIGFGESFRFQKVLQGQEILPSQPYGRRALSVDEACGNGRFGLFDGYQALRSRNGWSSHMSNKSSHLHSPVPSGQVSSPSSVLKFQQAVNPVSNSDYINKVSQVMEVLRTSQELVPSCKSRCRVFGFSLTEAIANKEAIDPSAEQGSGKLLHQRRATCCSIDLKIMMYTSSDSGIRSF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00849 652 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Cca01g00849 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 579 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca01g00849 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 579 621 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca01g00849 652 PANTHER AUXIN RESPONSE FACTOR 12 579 - -
Cca01g00849 652 PANTHER AUXIN RESPONSE FACTOR 579 621 - -
Cca01g00849 652 CDD B3_DNA 137 239 IPR003340 GO:0003677
Cca01g00849 652 SUPERFAMILY DNA-binding pseudobarrel domain 133 245 IPR015300 -
Cca01g00849 652 Gene3D - 302 376 - -
Cca01g00849 652 Gene3D - 137 241 IPR015300 -
Cca01g00849 652 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g00849 652 SMART B3_2 139 241 IPR003340 GO:0003677
Cca01g00849 652 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Cca01g00849 652 Pfam Auxin response factor 266 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00849 Cca-Chr1 11586842 11593980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00849 26 603 B3 DNA Binding Superfamily AT5G60450 44.065 2.18e-147 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca01g00849 B3 7.8e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00849 K14486 - gmx:100808119 1000.73