Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00843 ATGACATGGTGCAATGAGTCAGATGAAGAGAGGGGAATTGGAGTGGTCACACCCACTATTACTCCAACAACAACTAATAACACTCTTGTTAGTGTTACTGACCCAAAACCAACCGAAATTCGAACCATAAATTGTCCCTCGTGTGGCCATAACATTGAATTCCAAGATCAGAGTGGAATCAATGAGTTGCCGGGGTTACCATCTGGGGTGAAGTTCGATCCGAATGATCAGGAGATATTAGAGCATTTGGAAGCAAAGGTACTGTCTGATATGCCAAAGCTTCATCCCCTTATTGATGAGTTCATACCAACGCTTGAGGGCGAGAACGGGATTTGTTATACGCACCCAGAAAAGCTTCCAGGTGTAGGCAAAGATGGACAGATTCGCCACTTCTTTCACAGGCCATCTAAAGCATACACAACCGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAAGCGAGACAAGATGGCACAAAACAGGAAAAACTAGACCAGTTTTCGTTGGTGGTGCTGTGAAGGGTTTCAAAAAGATACTGGTTCTCTACACCAACTATGGGAGGCAAAAGAAGCCCGAGAAGACCAACTGGGTGATGCATCAATACCACCTTGGAAGCAACGAAGAAGAGAAAGATGGGGAATTAGTGGTTTCAAAGGTGTTCTACCAAACACAACCTCGACAATGTGGTAATAGTTCCATCACAAAGCAGGATCCTTATGATGAAGAAAGATTGACTAACCCAAGTGTCGTCCATGATCAAGACAATATAATAATACCTAAAAATAATGCAGCTCTTATGGACTACTACAATAATCCTTTCTTAAATTATGAGCATGTGGGTGGTCGTAACAATAATATGGAAACTTCACCTCAACTTATTCCAAATTTGGTTGTGCAAGGTGATACCTCTTCTTTCATTCGATTAGCAATGGATGCAACCAAAGCCAGGTTGGACAGAAAATAG 972 0.4218 MTWCNESDEERGIGVVTPTITPTTTNNTLVSVTDPKPTEIRTINCPSCGHNIEFQDQSGINELPGLPSGVKFDPNDQEILEHLEAKVLSDMPKLHPLIDEFIPTLEGENGICYTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGNSSITKQDPYDEERLTNPSVVHDQDNIIIPKNNAALMDYYNNPFLNYEHVGGRNNNMETSPQLIPNLVVQGDTSSFIRLAMDATKARLDRK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00843 323 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 307 - -
Cca01g00843 323 Pfam No apical meristem (NAM) protein 67 206 IPR003441 GO:0003677|GO:0006355
Cca01g00843 323 ProSiteProfiles NAC domain profile. 66 225 IPR003441 GO:0003677|GO:0006355
Cca01g00843 323 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 307 IPR044799 GO:0003700
Cca01g00843 323 SUPERFAMILY NAC domain 61 225 IPR036093 GO:0003677|GO:0006355
Cca01g00843 323 Gene3D NAC domain 75 229 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00843 Cca-Chr1 11427152 11431123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00843 1 242 NAC Transcription Factor Family AT4G28500 68.016 2.53e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca01g00843 NAM 3.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00843 - - gmx:100795920 538.11