Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00841 ATGAAGCATGGTAGCGGATACATTGCTTATGACATAGTCATGGTTACTCTATCTTTATGCCTCATTGTTCTTGGTGTGGTTCTTTTTCTTGCATGCAAGAGGAAACCGGTTGAGTCTCAAGAAACAGTTGTTGTGAAGCATTGTGCTCGTGTATACTCATTGATGGACATTGATGCTGCCACTGATGGCTTCAACCATAGAAGAATAATGGGAAAGGGTCGCTTGGGAACGGTGTATGCTGGGGTGCAAGAGAATGGAGAACTTGTGGCTGTGAAAAGGATTCATTCTGTGCTTGTGTTGAGCAATGCAGGGTTAGGGTTCTCATCGGTGTTGAAATGGCTCTCTTCAGCTCAACACCCCAACGTGGTTCCCATAATAGGATTCTCAGAAGCACCGGGTGAGAGGATCATAGTGATGGAGTTTGAACGCATGGTGAGTTTGGAGTTCTATTTGCACCAAAATGTTAATGAGGCTTCACTTTTGGATTGGAACAAGAGGGTCAGAATTGCTGCTGGAGCAGCTAGGGGGCTTGAGTATTTGCATGAAGTGGCAACATCAAACATTGTACATGGGTGTGTCAAGTCCTCAAATGTTTTGATTGATGTCAACTTTTGTCCTAGGATTTGTGATTATGGTCTCAACTTTTTGGCACCATGGAAAAAGAGAGGGCTTGTAGGTTATGTGGATGATGAGTATTGGAATGAAAGTGGGGGTGGTGGTGCTAGCAAGGAAAGTGATGTTTATGGTTTAGGGGTGGTATTGCTTGAGCTATTGAGTGGTAGAGGATGTGAGGAAGGATTACTTGCAAAGTGGGCATTGCCTTTGATCAAGGAAATGAGTTTTAGTGAACTTTTGGATCCTAGGTTGGTAATTCCTTCTGACATGAAACCTTTAGTTAGATTATCCAAAGTTGCTTCAGCTTGTGTTGGTAATTCAAGAAAGTGTAGGCCTTCCATTGCTCAAGTGACAACTATTTTGAACAATTTAGAGATTGAAGTGTGCATATGA 1008 0.4266 MKHGSGYIAYDIVMVTLSLCLIVLGVVLFLACKRKPVESQETVVVKHCARVYSLMDIDAATDGFNHRRIMGKGRLGTVYAGVQENGELVAVKRIHSVLVLSNAGLGFSSVLKWLSSAQHPNVVPIIGFSEAPGERIIVMEFERMVSLEFYLHQNVNEASLLDWNKRVRIAAGAARGLEYLHEVATSNIVHGCVKSSNVLIDVNFCPRICDYGLNFLAPWKKRGLVGYVDDEYWNESGGGGASKESDVYGLGVVLLELLSGRGCEEGLLAKWALPLIKEMSFSELLDPRLVIPSDMKPLVRLSKVASACVGNSRKCRPSIAQVTTILNNLEIEVCI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00841 335 Gene3D Transferase(Phosphotransferase) domain 1 144 333 - -
Cca01g00841 335 SUPERFAMILY Protein kinase-like (PK-like) 39 326 IPR011009 -
Cca01g00841 335 Gene3D Phosphorylase Kinase; domain 1 28 141 - -
Cca01g00841 335 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Cca01g00841 335 Pfam Protein kinase domain 65 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00841 335 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 334 - -
Cca01g00841 335 ProSiteProfiles Protein kinase domain profile. 64 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00841 335 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 6 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00841 Cca-Chr1 11393819 11394863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00841 49 326 Receptor kinase-like Gene Family AT3G59420 41.638 8.24e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca01g00841 Pkinase 5.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00841 - - gmx:100809726 578.941