Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00839 ATGCTTAACCTCTCTTACAACCCCTTTTTCCCCGGTCGGATCCCGCCGGAGCTGGGGAACCTCACCAACCTCCAGGTGCTCTGGCTCACACAATGCAACCTCGTCGGCGTCATCCCTTCCTCCCTCGGGAACCTCGTTAACCTCCAGGACTTGGACCTCGCGCTCAACGACCTCTACGGTTCAATCCCCAGCGAGCTCGTTCGGTTAACCAGCTTGAAGCAGATCGAGTTGTACAATAACTCCCTCTCCGGGGAGCTTCCCAGGGGAATGGGGAACCTCACCAACTTGAGGCTTCTCGATGCTTCCATGAACCACTTGACGGGGAACATTCCTGAGGACCTTTGTTCCTTGCCGTTGGAGAGTCTCAATCTCTATGAGAATCGCTTCCAGGGGGAGCTACCTGCCGCCATTGCCAACTCGCCTAATCTTTATGAGTTGAGACTCTTCGGGAACCGTCTCACCGGGAAGTTACCGGCCAATCTCGGCAAAAACTCGCCGCTCCGGTGGCTCGATGTTTCCAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATATGGGGGCGTTGGAGGAGCTTTTGATTATATACAATCTTTTCTCCGGGGAGATTCCGGCGAGTTTAGGCACGTGCCAGAGTTTGACACGTGTGAGACTCGGTTTCAACCGGTTGTCCGGCGAGGTTCCGGCCGGGATCTGGGGGCTTCCGCACGTGTATCTTCTTGAACTTGTTGATAACTCCTTCTCCGGTTCCATCGCCAGGACCATTGCCGGCGCGGGGAACTTGTCGTTGTTGATTCTCTCCAAGAACAACTTCACGGGCGCGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGGAGTTTTCCGCGAGTGACAACAAGTTCAGTGGTTCGTTGCCTGAGACTATTGTGAATCTTGGCCAGCTTGGGATTCTTGATTTTCATAACAATAGACTCTCCGGGGAGCTTCCCAGGGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCTAACAATGAGATTGGTGGCAAGATTCCTGATGAAATTGCGGGTTTGTCCGTGCTTAATTTTCTAGATCTTTCTAGAAACCGCTTTTCAGGGAAAGTCCCCAACGGGTTGCAGAATCTCAAGCTGAATCAGCTGAATTTGTCTTACAATCGTTTGTCTGGTGAACTTCCTCCTATGTTGGCTAAGGATATCTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGGGATTTGAAGGGTTTGTGTGATGGTAGGAGTCAGGAGAAGAGTGTGGGTTATGTTTGGTTGCTTCGAACTATTTTCGTTGTTGCCACTGtggttttctttgttggtgtggtttggtttTACTTTAGGTATAGGAATTTCCAGGATGCCAAGAGGGCGATTGATAAATCCAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAACTGCCTTGACGAGGATAATGTGATTGGAAGCGGATCCTCAGGGAAGGTCTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGTGGGGTTAAGAAGGAAGTAGAGAGTGGGGATGTTGAGAAGGGTAGGGTTCAGGACAATGCTTTTGATGCGGAGGTTGAAACTTTGGGCAAGATCAGGCACAAGAACATTGTCAAGCTCTGGTGTTGCTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCCAATGGTAGTCTTGGTGATTTGCTGCATAGCAGTAAGGGAGGGTTGTTGGATTGGCCAACAAGGTACAAGATAGCTGTGGATGCTGCAGATGGCCTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTGAAATCTAACAACATCTTGTTGGACGGAGACTTTGGTGCGAGGGTGGCGGATTTTGGAGTAGCTAAGGCGGTCGAAACCACAGCCAAAGGGACTAAATCAATGTCCGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATACAGTTTCGGGGTTGTGATACTTGAGTTGGTTACTGGAAGACGCCCCGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACAACCTTGGACCAGAAAGGCGTGGACCATTTAATTGACTCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATCAACCGGCCTTCAATGAGGAGAGTGGTGAAGATGTTGCAAGAGGTGGGCACGGAGAACCTAACGAAACCTGCCAAGAAAGATGGCAAGTTTTCCCCTTATTACTATGACGATGCCTCAGATCATGGAAGTGTTGTTTAA 2424 0.4876 MLNLSYNPFFPGRIPPELGNLTNLQVLWLTQCNLVGVIPSSLGNLVNLQDLDLALNDLYGSIPSELVRLTSLKQIELYNNSLSGELPRGMGNLTNLRLLDASMNHLTGNIPEDLCSLPLESLNLYENRFQGELPAAIANSPNLYELRLFGNRLTGKLPANLGKNSPLRWLDVSSNQFWGPIPATLCDMGALEELLIIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFTGAIPDEVGWLENLVEFSASDNKFSGSLPETIVNLGQLGILDFHNNRLSGELPRGIRSWKKLNDLNLANNEIGGKIPDEIAGLSVLNFLDLSRNRFSGKVPNGLQNLKLNQLNLSYNRLSGELPPMLAKDIYRSSFLGNPGLCGDLKGLCDGRSQEKSVGYVWLLRTIFVVATVVFFVGVVWFYFRYRNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVKKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVETTAKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENLTKPAKKDGKFSPYYYDDASDHGSVV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00839 807 SMART LRR_typ_2 356 379 IPR003591 -
Cca01g00839 807 SMART LRR_typ_2 308 332 IPR003591 -
Cca01g00839 807 SMART LRR_typ_2 45 69 IPR003591 -
Cca01g00839 807 SMART LRR_typ_2 93 117 IPR003591 -
Cca01g00839 807 SMART LRR_typ_2 21 44 IPR003591 -
Cca01g00839 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Cca01g00839 807 Pfam Protein kinase domain 496 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00839 807 Gene3D Ribonuclease Inhibitor 119 425 IPR032675 -
Cca01g00839 807 ProSitePatterns Protein kinases ATP-binding region signature. 500 523 IPR017441 GO:0005524
Cca01g00839 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 789 - -
Cca01g00839 807 SMART serkin_6 494 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00839 807 PANTHER LRR RECEPTOR-LIKE KINASE 1 789 - -
Cca01g00839 807 Gene3D Transferase(Phosphotransferase) domain 1 582 798 - -
Cca01g00839 807 SUPERFAMILY L domain-like 10 403 - -
Cca01g00839 807 Gene3D Phosphorylase Kinase; domain 1 478 581 - -
Cca01g00839 807 Pfam Leucine Rich Repeat 23 45 IPR001611 GO:0005515
Cca01g00839 807 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Cca01g00839 807 ProSiteProfiles Protein kinase domain profile. 494 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00839 807 SUPERFAMILY Protein kinase-like (PK-like) 489 774 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00839 Cca-Chr1 11372988 11375887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00839 1 807 Receptor kinase-like Gene Family AT1G28440 72.482 0.0 1214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca01g00839 Pkinase 4.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00839 - - gmx:100810256 1503.03