Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00836 ATGGAGTCGCGAGTGTTGTCACGCGCCGCAACCTTCACCTCCCTCCCTCACCTCCGCAAGCCGCCGCGGGAGGTCGCCGTTGCCTCCCTCGTCCCCGTGAAGTCCGTCGCCGACGGCGGGAACCTGATTTGGGGGAGGCAGCTCCGTCCGGAGCTCTGCTCGCCGGCGCTGAAGAGGGAGGCCGTCCTCCTCCGGCCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGGAGTGATTCCGCCGGGGAAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCCGCTCTCGTCACCGGATTTTTCTTCTTCACGTGGTACTTTTTGAATGTCATTTTTAACATCCTCAACAAAAAGATCTACAATTACTTCCCCTATCCATACTTCGTATCTGTTATCCATTTATTCGTGGGTGTGGTGTACTGTTTGATTAGCTGGACCGTGGGCCTTCCAAAGCGTGCTCCTATAGACTCCAACCTGCTGAAGTTGCTCATTCCGGTGGCTGTGTGCCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACACATACCATTAAAGCTCTCGAGCCATTCTTCAATGCTGCAGCATCACAATTTATACTTGGCCAATCAATCCCCATCACTTTGTGGCTCTCATTGGCTCCAGTTGTTATCGGTGTGTCCATGGCATCCTTGACCGAGCTCTCATTCAACTGGACTGGATTCATAAGTGCTATGATTTCAAACATTTCCTTCACATACAGGAGCATCTATTCAAAGAAAGCCATGACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCTGTAATTGTGGAAGGGCCTACACTTTTGAAGCACGGCTTCAATGATGCTATTGCTAAAGTAGGTTTGGTCAAGTTCGTCTCAGATCTCTTCTGGGTTGGGATGTTTTACCACCTCTACAACCAGGTGGCTACTAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTCGGTAACAAGATTAGCACCCAAACTGGTATTGGAACAGCCATTGCAATTGCTGGAGTGGCACTTTACTCGTTCATCAAAGCCAAGATGGAGGAAGAGAAGCGACAAGCGAAAGCAGCGTAA 1206 0.5017 MESRVLSRAATFTSLPHLRKPPREVAVASLVPVKSVADGGNLIWGRQLRPELCSPALKREAVLLRPCLAAASSPAEGSDSAGEKVAPAGFFDKYPALVTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWTVGLPKRAPIDSNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPAVIVEGPTLLKHGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTAIAIAGVALYSFIKAKMEEEKRQAKAA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00836 401 Coils Coil 384 401 - -
Cca01g00836 401 Pfam Triose-phosphate Transporter family 98 385 IPR004853 -
Cca01g00836 401 PANTHER SOLUTE CARRIER FAMILY 35 28 393 - -
Cca01g00836 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
Cca01g00836 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 317 386 - -
Cca01g00836 401 PANTHER BNAC02G47130D PROTEIN 28 393 - -
Cca01g00836 401 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 97 395 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00836 Cca-Chr1 11286154 11292227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00836 1 399 Antiporters AT5G46110 78.072 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00836 K15283 - gmx:100794336 741.495