Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00835 ATGACAATAAAATACATGAAAGACGTGATGTTAAAACAAATAAGGCTATGGCAAGGACATCTCGTGACCATCAATTTCTACCAAAACAATCTAGCATCAGGTCTGATGCTTTTGGACATTGCAACCAATCTCATTTACATGATCCAATGGAAGGATAATGATGTTGCGGCCCAAAGGGAAATGTACCAAAATAGAGCTAATGTCGGAATGCACTCTCACTTTACTAATCGCCAAATTGTTGAGCCAGAAAATCTCAATGCTCTACCAAGTGGACAAGTTTTGCACAACAGTGCAATGCGGATTGAAAAGAAACGAAAGAGTGGTGATGCTCGGGATGTTGAAGCCCACGAGATGAAAATCCGGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGATTGAAGAGCgaacaagaaaagaaatggagagaaaagaTCTTGAAAGAAGGAAGGAAGAAGAGAGGTTGATGCGGGAGAGATTGCGAGAGGAGGAAAAAGCAAGACGTGAAATTGAGAAAAGGGAAAAGGTTTTGCTGAAAGAAAATTTAAAAGCAGAGAAAATGAGGCAAAGAGAACAGCTTCGCAAAGAGAAAGAAGAAGAGAGAAGGAAAACTGCTCTTGAGAAGGCAACTGCTCGTAGAATAGCTAGGGAATCTATAGAACTTTTTGAGGATGAACAGCTAGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGATTTCTTCTATTATCCATCTTGATTTTGATACTCTGCAACACCTCGAATCATTTAGGGATTCTTTGAGTGTTTTCCCGCCAGAGAGTGTAATGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAAAAAAATGTCGGCAATCTTTTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAATTGTGGCCTTTTACTATAGATGAGTTTGTTCAAGCATTTCACGACTATGATTCAAGATTGTTAGGTGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAAGACATTCAAGATGTTGCAAGGACGCCTTCTACAAGATTAGGAATGAATCAGAATGGTGCTACTAACTTTGGAGGTGGCCATCCAAAGATTGTGGAAGGCGCATATGCATGGGGTTTTGACATACGAAATTGGCATAAGCATTTAAATCTATTGACCTGGCCAGAAATTTTTCGACAGTTAGCATTATCTACCGGATATGGACCACAGTTGAAGAAAAAAAGTATTACCTGGTCTTATGCAAATGGTAGAGACGAGGGCAGGAATTGTGAAGATATCATATCTACACTTCGTAATGGTTCAGCTGCTGAAAATGCTTTTGCAAAAATGCATGAGAAAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAGTTTGCAGCATTTCATGTTCTCTCACTTGAGGATAAAAAGGGATTGACAATACTAGAGCTTGCTGAAAAAATTCAGATATCTGGTCTTCGAGATCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTATCAAGAGATGTCAAGCTTTTTAAAAGAATAGCTCCATCAACATATTGTTTACGTAAAGCCTTTAGAAAAGATCCTGCTGATGCCGAGTCCATTCTTTCAGAAGCAAGGAAGAAAATTCAAATTTATGAAAATGGGTTTCTAGCTGGGGAGGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAATTGATGAGGATCCTGAAGTTGATTTAAGTCTGTCAAGTGCTAACAAAACATCTGAACAATGTGACAATTTAACTTCAAATGGAAAAGAAAATTTGGATCATGATGTTGAACTTCAAAGTGAGTTTGACAAGGATCTACCTTATCTTCCTAAGAATGGTTCCAAAAATGCTGATGCTCCAATTGCCGTCACTAGACAACCTGGTGCTTGTGAAGATCTTAATGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCGGAAGGAGAATATTCTGATCTTAGTGTAGAAGAGCGACTAAATGCCCTTGTTGTGTTGGCTGCTGGGGCAAATGAAGGGAGGTCAACACGAGTTGTTCAGGAACGTTTAGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTAGATAAACTTTGTCTAAGAGATGATGTTTTCTTTAAATCAGATTTTCCATGTATCAATGGGAATAAAGTTGAAATACAAAACTCTTGTCCTACCTTGGAGGGCAACCAAAGCCCATTGCTTGGAATTAATATTAGCAACAATAATAAATACGTGCCCTCTCCCAGCTTTGCTGAAAATCAAAAGGCAGCTTCTAGTATACAGAGCCTGTCTATTGAAAAGCACTCTTCACTCCAAGATCTCTACACTAGTTCAGATATCCATCACACTCAGTCATTTGCACAATATTCAAAAAGGTCACGTTCTCAGTTGAAATCTTATATTTCCCACATAGCAGAGGAGATGTATGTCTATAGATCCTTACCCCTTGGGCAAGATCGCAGACATAACCGTTATTGGCAATTTGTTGCATCAGCTTCTTCCAACGATCCTGGCTCTGGCAGAATTTTTGTTGAATACCATGATGGCAATTGGAGGCTTATTGATACTGAGGAGGCCTTTGATGTGCTTCTGAATTCACTTGATTCACGCGGGATCAGGGAATCTCATTTGCGTCTAATGTTGCAAAAGGTCGAGACTTCCTTTAAACAAAATGTTTGCAAGAATACACAATGTTCCAAAATCAGAGGTGAAACATCTGTTAAAAATGAAGTTGATGAAACAGATTCCAGTTCCGATGGCCACACTGAATCTGACAGTCCTAGCAGTACCCTTTGTGGATTGAACTTTGACACTTTAGAAACTTCATCATCCTTCAAAATCGAGCTTGGGAAAAGCGAGAGTGAGAAGAAATCTGCCTTGAGAAGGTACCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAGCTCATCAATATTGTGTGCAATGAAATATGGGAAAAAGAGATGCAAACCTCAGGTTGTCATCTGTGATATTTGTCTCAACCCTTATTTCTTTGAAGACTCCCATTGTAGTTGTTGCCACCGGTCTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAATTTTCAAAAGATGTTTTTGTTTTGGATTATTCTCTTCCTTTGCAGACAAGATTACTCAAGGCTCTGCTAGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAAATTGGACAGAAGATATTAGGAGGCCTTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTTGAGGAATTGCTACAGATATTTACACTACTTGAGAGAGCATTGAAGCGAAACTTTTTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACTCTATGTCAAAGAGTGTTGCACAGACCTCTACCGATCCTGAATCAATTGTTGTACTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGACTTTTTGAGTTTGATGCATCCATTGTCTACGTACTACGTGAGAGACCTGAGCCTTGTGAGAAGAAAGATGATAGAGAATACACAAAGCTTCCTTCAAGATATAATCCATCTAAATCTAGAAAAGTGGTTGGACGAGCAGACTTGGACAATGATGAATTCATGAAAGTTAGATCTGCTCCTGTGAAAATTGTGCAAAGTAACAATAAACAAGGAGAACAAGGGAGTTGTGATAAAGGACGGGGTAAAAAGTTGTCAAAAAGAAAACAAGATAGTGGCCATCGTAATGCTAAGGTTGCTAGAAGCCTAAATCAAAGAATAAAACAGCAGAGAACAGGATCAGAAGGACAAGTTGGTGGACGTGGTCGCCAAACAGTCAAGAAAAGAAGGGCTAGGGAGAGGGCTACTGAAGACTTGTTGCTGGGCCATAAGGGTGCCAATCGTAGCTCTAGTATTGGTAGAGAATCATTGAGAAGCTTGGATGAGGATTTGAATGATGATAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCTAACATCAGTAACAACACCGAAGAGGTTGAATCTGATGACAATGTCCAAGCAATGGAATCTGATGACAATGGTCAAGCTGTGGAATATGATCAAGGCAACTGGGAAATAGGTTATAATGGCACTCCCAGCAGATGGAGTAGGGATTTAGTTGGAATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAACAACAACGGGAATAGTAATGAGATTGGCATTGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTACATGCAAATAG 4407 0.3975 MTIKYMKDVMLKQIRLWQGHLVTINFYQNNLASGLMLLDIATNLIYMIQWKDNDVAAQREMYQNRANVGMHSHFTNRQIVEPENLNALPSGQVLHNSAMRIEKKRKSGDARDVEAHEMKIRKELEKQDNLRRKIEERTRKEMERKDLERRKEEERLMRERLREEEKARREIEKREKVLLKENLKAEKMRQREQLRKEKEEERRKTALEKATARRIARESIELFEDEQLEMMELAASSKGISSIIHLDFDTLQHLESFRDSLSVFPPESVMLRKPFAIKPWINSEKNVGNLFMVWRFLITFADVLELWPFTIDEFVQAFHDYDSRLLGEIHVALLKVIIKDIQDVARTPSTRLGMNQNGATNFGGGHPKIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSTGYGPQLKKKSITWSYANGRDEGRNCEDIISTLRNGSAAENAFAKMHEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEDKKGLTILELAEKIQISGLRDLTTSKTPEASISVALSRDVKLFKRIAPSTYCLRKAFRKDPADAESILSEARKKIQIYENGFLAGEDADDVEREESESDEIDEDPEVDLSLSSANKTSEQCDNLTSNGKENLDHDVELQSEFDKDLPYLPKNGSKNADAPIAVTRQPGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLAAGANEGRSTRVVQERLEAANALKKQMWAEAQLDKLCLRDDVFFKSDFPCINGNKVEIQNSCPTLEGNQSPLLGINISNNNKYVPSPSFAENQKAASSIQSLSIEKHSSLQDLYTSSDIHHTQSFAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRHNRYWQFVASASSNDPGSGRIFVEYHDGNWRLIDTEEAFDVLLNSLDSRGIRESHLRLMLQKVETSFKQNVCKNTQCSKIRGETSVKNEVDETDSSSDGHTESDSPSSTLCGLNFDTLETSSSFKIELGKSESEKKSALRRYQDFQKWMWKECYSSSILCAMKYGKKRCKPQVVICDICLNPYFFEDSHCSCCHRSFPSNNGFNFSKHAFQCGDKFSKDVFVLDYSLPLQTRLLKALLAFIEVSVPPEAFQSNWTEDIRRPWSVKLSKSSSVEELLQIFTLLERALKRNFLSSTFSTTGEQLGLNSMSKSVAQTSTDPESIVVLPWVPLTTSAVSLRLFEFDASIVYVLRERPEPCEKKDDREYTKLPSRYNPSKSRKVVGRADLDNDEFMKVRSAPVKIVQSNNKQGEQGSCDKGRGKKLSKRKQDSGHRNAKVARSLNQRIKQQRTGSEGQVGGRGRQTVKKRRARERATEDLLLGHKGANRSSSIGRESLRSLDEDLNDDKASPMTPIHMGAANISNNTEEVESDDNVQAMESDDNGQAVEYDQGNWEIGYNGTPSRWSRDLVGMSDEDVEASEDDNDNNNGNSNEIGIEEEDSEADVMSEGSDGTCK 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00835 1468 PANTHER HOMEOBOX DOMAIN PROTEIN 44 1465 - -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 1348 1362 - -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 565 609 - -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 589 606 - -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 1214 1235 - -
Cca01g00835 1468 Coils Coil 113 211 - -
Cca01g00835 1468 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 848 920 IPR028941 -
Cca01g00835 1468 SMART testlast3 284 343 IPR018501 -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 1290 1312 - -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 940 967 - -
Cca01g00835 1468 ProSiteProfiles DDT domain profile. 284 343 IPR018501 -
Cca01g00835 1468 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 670 697 IPR028942 -
Cca01g00835 1468 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 44 1465 IPR044977 GO:0006357
Cca01g00835 1468 MobiDBLite consensus disorder prediction 941 956 - -
Cca01g00835 1468 Pfam DDT domain 286 340 IPR018501 -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 1396 1468 - -
Cca01g00835 1468 Pfam HB1, ASXL, restriction endonuclease HTH domain 466 534 IPR007759 GO:0006355
Cca01g00835 1468 MobiDBLite consensus disorder prediction 1257 1380 - -
Cca01g00835 1468 MobiDBLite consensus disorder prediction 567 586 - -
Cca01g00835 1468 ProSiteProfiles HARE-type HTH domain profile. 466 535 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00835 Cca-Chr1 11266883 11282299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00835 79 1412 Homeobox Transcription Factor Family AT1G28420 48.445 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca01g00835 WSD 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00835 - - gmx:100784945 2127.83