Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00823 ATGGCCCCAAGTGAGAGCAAGAAGGTTCATGTGGAGAAAGTGCCTTATCGAGGAGTGAGGAGAAGACAATGGGGGAAGTATGTGGCTGAGATTAGAGACCCCTTCAAGAAAAAGTGTGTGTGGCTCGGAACCTTTAACTCTGCCATAGATGCTGCCAAAGCATACGATGTTGCCGCCATTCAGATTCGTGGACCTGACAAGGCCAAAACAAACTTCCCAATCCCTCCCTCGCACCTTCTCACCTGCTCAACAACTCATCACCAAACCCACTCTAAACAAACACTTATACTTGATTTGGATCTTAACCAATATCCTGCCCAAGAAATTCCTTGA 333 0.4685 MAPSESKKVHVEKVPYRGVRRRQWGKYVAEIRDPFKKKCVWLGTFNSAIDAAKAYDVAAIQIRGPDKAKTNFPIPPSHLLTCSTTHHQTHSKQTLILDLDLNQYPAQEIP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00823 110 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Cca01g00823 110 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Cca01g00823 110 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Cca01g00823 110 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Cca01g00823 110 Pfam AP2 domain 16 64 IPR001471 GO:0003700|GO:0006355
Cca01g00823 110 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Cca01g00823 110 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Cca01g00823 110 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Cca01g00823 110 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 83 - -
Cca01g00823 110 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 10 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00823 Cca-Chr1 11106198 11106594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00823 16 96 AP2-EREBP Transcription Factor Family AT3G20310 58.333 3.13e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g00823 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00823 K09286 - sspl:121791865 93.2041