Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00818 | ATGGCACCGTCGAATCACTCTGACGATGATTCGGAAAACGACCACgaggaagaggaagaggaagagcaagaggaaCCCGGAGATGAAGTTGAATGCGATCGAAGTGGTTCTTCCAGCGACGGGGATGAGAACTTGATTGAGGTCGAGATCCAGGAGGAGAAGGAGGAAGAGAACTTGAACAAGGATGAATATATACTTGTAGATTTGGCATCAGTACGCAAGGAATTTCAGTGTGCTATCTGCCTAGGCGTTATTCGAAAAACAAGAACGGTTATGGAATGCCTGCATCGCTTTTGCAGACAGTGTATAGACAAAGCCATACGCACAGGTAAGAATGAATGCCCTACTTGCCGTGCACATTGTGCTAGTCGACGCTCGCTGAGAGATGACCCAAACTATGATGCCTTGATTTCTGCTATCTACCCTGATATTGACAAGTACGAGGCACAGGAATTGGCTTTGCGTGAAGAGGAGATAAATCGCAATAAGAAGAAGACCCAAGATTCCTTTGCTAAGACTCTCCAACGTCAAACAGAAGCCGCTGGTAGTAAACGGCGGAAGGCTAGGGCAACAGCTGCAGCTTTTGTGAGGTCACAAGAAACTATACTGGAAGGAGGTGGAGGTGGAGAAGAAGAAACAAAACCTCCACAGGAATCTGCTCCTGTGGCTAGTGAAACTGGTGATGAAAATATTTCAGATGTGAATAGAGAAATAAGTTCACCTGGTACACTTGTTTGTGGAGAAGGAGAAACACAATTTCCGCAGGAAACTGAGGATATGGATGTTGATGAAACTGATGATGAATATATTCCATACATGAGTATAGATATAAGTTCATATGGTAGTGAAGAAAATGATGACCAGAGTAACACCGAAGTCGATGGCGAGAGTGCCAGGAGCAGTCGCATCACCAGTTTAATTAATCATCTCCGTAACTCGGAAGCAGATGAAGTTGAGATGGAGATCCCCCTAAAGCTTGTCTCTTTGGATGAGCAAAGGATACCAAATTTGCAGGAGCCATACATTTGCTGCAAACCTAGTGTATCATTGAAGACGCTGCGGAAGTATGTTGCACTTAAAACTGAGGTGGTGCAAGCTGATGAAGTTGAATTATGCTTGGTAGAAGATCCACAAGCCTATATTCTAGGAGGTGAAAGATCTGTTGATGATATAAACAAGGATAAATTGCGTGTTCTAGGAGATGAAGAAACTTTAGGTGAACTATACACACCCAGTGTCATCAGCCGCGGTCCAATGATCTTGGCCTACAAGATGAAGTAG | 1281 | 0.4309 | MAPSNHSDDDSENDHEEEEEEEQEEPGDEVECDRSGSSSDGDENLIEVEIQEEKEEENLNKDEYILVDLASVRKEFQCAICLGVIRKTRTVMECLHRFCRQCIDKAIRTGKNECPTCRAHCASRRSLRDDPNYDALISAIYPDIDKYEAQELALREEEINRNKKKTQDSFAKTLQRQTEAAGSKRRKARATAAAFVRSQETILEGGGGGEEETKPPQESAPVASETGDENISDVNREISSPGTLVCGEGETQFPQETEDMDVDETDDEYIPYMSIDISSYGSEENDDQSNTEVDGESARSSRITSLINHLRNSEADEVEMEIPLKLVSLDEQRIPNLQEPYICCKPSVSLKTLRKYVALKTEVVQADEVELCLVEDPQAYILGGERSVDDINKDKLRVLGDEETLGELYTPSVISRGPMILAYKMK | 426 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00818 | 426 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - | |
Cca01g00818 | 426 | MobiDBLite | consensus disorder prediction | 279 | 301 | - | - | |
Cca01g00818 | 426 | MobiDBLite | consensus disorder prediction | 160 | 262 | - | - | |
Cca01g00818 | 426 | CDD | RING-HC_RING1_like | 78 | 118 | - | - | |
Cca01g00818 | 426 | ProSitePatterns | Zinc finger RING-type signature. | 94 | 103 | IPR017907 | - | |
Cca01g00818 | 426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 141 | IPR013083 | - | |
Cca01g00818 | 426 | PANTHER | OS11G0578200 PROTEIN | 8 | 426 | IPR044592 | - | |
Cca01g00818 | 426 | SMART | ring_2 | 78 | 117 | IPR001841 | - | |
Cca01g00818 | 426 | ProSiteProfiles | Zinc finger RING-type profile. | 78 | 118 | IPR001841 | - | |
Cca01g00818 | 426 | PANTHER | OS11G0578200 PROTEIN | 8 | 426 | - | - | |
Cca01g00818 | 426 | SUPERFAMILY | RING/U-box | 77 | 133 | - | - | |
Cca01g00818 | 426 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cca01g00818 | 426 | Pfam | Zinc finger, C3HC4 type (RING finger) | 77 | 117 | - | - | |
Cca01g00818 | 426 | MobiDBLite | consensus disorder prediction | 219 | 239 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00818 | Cca-Chr1 | 11013489 | 11021358 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g00818 | 72 | 141 | C3H Transcription Factor Family | AT3G23060 | 35.616 | 1.10e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00818 | K10695 | - | qsu:112040979 | 303.908 |