Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00818 ATGGCACCGTCGAATCACTCTGACGATGATTCGGAAAACGACCACgaggaagaggaagaggaagagcaagaggaaCCCGGAGATGAAGTTGAATGCGATCGAAGTGGTTCTTCCAGCGACGGGGATGAGAACTTGATTGAGGTCGAGATCCAGGAGGAGAAGGAGGAAGAGAACTTGAACAAGGATGAATATATACTTGTAGATTTGGCATCAGTACGCAAGGAATTTCAGTGTGCTATCTGCCTAGGCGTTATTCGAAAAACAAGAACGGTTATGGAATGCCTGCATCGCTTTTGCAGACAGTGTATAGACAAAGCCATACGCACAGGTAAGAATGAATGCCCTACTTGCCGTGCACATTGTGCTAGTCGACGCTCGCTGAGAGATGACCCAAACTATGATGCCTTGATTTCTGCTATCTACCCTGATATTGACAAGTACGAGGCACAGGAATTGGCTTTGCGTGAAGAGGAGATAAATCGCAATAAGAAGAAGACCCAAGATTCCTTTGCTAAGACTCTCCAACGTCAAACAGAAGCCGCTGGTAGTAAACGGCGGAAGGCTAGGGCAACAGCTGCAGCTTTTGTGAGGTCACAAGAAACTATACTGGAAGGAGGTGGAGGTGGAGAAGAAGAAACAAAACCTCCACAGGAATCTGCTCCTGTGGCTAGTGAAACTGGTGATGAAAATATTTCAGATGTGAATAGAGAAATAAGTTCACCTGGTACACTTGTTTGTGGAGAAGGAGAAACACAATTTCCGCAGGAAACTGAGGATATGGATGTTGATGAAACTGATGATGAATATATTCCATACATGAGTATAGATATAAGTTCATATGGTAGTGAAGAAAATGATGACCAGAGTAACACCGAAGTCGATGGCGAGAGTGCCAGGAGCAGTCGCATCACCAGTTTAATTAATCATCTCCGTAACTCGGAAGCAGATGAAGTTGAGATGGAGATCCCCCTAAAGCTTGTCTCTTTGGATGAGCAAAGGATACCAAATTTGCAGGAGCCATACATTTGCTGCAAACCTAGTGTATCATTGAAGACGCTGCGGAAGTATGTTGCACTTAAAACTGAGGTGGTGCAAGCTGATGAAGTTGAATTATGCTTGGTAGAAGATCCACAAGCCTATATTCTAGGAGGTGAAAGATCTGTTGATGATATAAACAAGGATAAATTGCGTGTTCTAGGAGATGAAGAAACTTTAGGTGAACTATACACACCCAGTGTCATCAGCCGCGGTCCAATGATCTTGGCCTACAAGATGAAGTAG 1281 0.4309 MAPSNHSDDDSENDHEEEEEEEQEEPGDEVECDRSGSSSDGDENLIEVEIQEEKEEENLNKDEYILVDLASVRKEFQCAICLGVIRKTRTVMECLHRFCRQCIDKAIRTGKNECPTCRAHCASRRSLRDDPNYDALISAIYPDIDKYEAQELALREEEINRNKKKTQDSFAKTLQRQTEAAGSKRRKARATAAAFVRSQETILEGGGGGEEETKPPQESAPVASETGDENISDVNREISSPGTLVCGEGETQFPQETEDMDVDETDDEYIPYMSIDISSYGSEENDDQSNTEVDGESARSSRITSLINHLRNSEADEVEMEIPLKLVSLDEQRIPNLQEPYICCKPSVSLKTLRKYVALKTEVVQADEVELCLVEDPQAYILGGERSVDDINKDKLRVLGDEETLGELYTPSVISRGPMILAYKMK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00818 426 MobiDBLite consensus disorder prediction 11 29 - -
Cca01g00818 426 MobiDBLite consensus disorder prediction 279 301 - -
Cca01g00818 426 MobiDBLite consensus disorder prediction 160 262 - -
Cca01g00818 426 CDD RING-HC_RING1_like 78 118 - -
Cca01g00818 426 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Cca01g00818 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 141 IPR013083 -
Cca01g00818 426 PANTHER OS11G0578200 PROTEIN 8 426 IPR044592 -
Cca01g00818 426 SMART ring_2 78 117 IPR001841 -
Cca01g00818 426 ProSiteProfiles Zinc finger RING-type profile. 78 118 IPR001841 -
Cca01g00818 426 PANTHER OS11G0578200 PROTEIN 8 426 - -
Cca01g00818 426 SUPERFAMILY RING/U-box 77 133 - -
Cca01g00818 426 MobiDBLite consensus disorder prediction 1 44 - -
Cca01g00818 426 Pfam Zinc finger, C3HC4 type (RING finger) 77 117 - -
Cca01g00818 426 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00818 Cca-Chr1 11013489 11021358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00818 72 141 C3H Transcription Factor Family AT3G23060 35.616 1.10e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00818 K10695 - qsu:112040979 303.908