Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00817 ATGGCGGCGGAGATTTCATCTTCAGGGTACAAGGAGTATGTGGCTGGCTTGCTCGCCGGTGTTGCCGCTGTAGCCACTGGCCACCCCTTTGACACCGTCAAGGTGAAGCTGCAAAAGCACAATACAGAAGCACATATGATTCATTATAGAAGCGGATTGCATTGCACTGCTAGGATATTGAAGACTGAAGGAATCAAAGGACTTTATAGAGGAGCAACATCATCTTTTATTGGGATGGCTGTCGAAGGCTCACTCTTTTTTGGCATTTATTCTCAGACAAAACTGTATCTTCAGGGGGGAGTTCAAAGTGGGGAACCACGGCTTCAAGTGATAGTTCCATCTGCAGCTTTTAGTGGTGCCATCATCAGTTTTGTATTAGGTCCCACAGAGCTGATAAAGTGTAGGATGCAGATACAAGGCACCGACTCTTTGGTTCCTATGTCCAGTAGATATAGTAGTCCCCTTGATTGTGCCCTTAAAACAGTAAAAACTGAAGGGGTGAAAGGAATTTTTCGTGGAGGTTGTGCAACATTCCTTAGAGAATCTATAGGGAATGCTGTCTTTTTGAGTGTATACGAAAATGTTCGTTATCACATGCATTCAAATATCAAAGCTTCTTCATCTAGTTACAGCAATCTGGCTGATATTGGAATTGGGATCGTTACTGGTGGCCTCGGTGGTGTGGCTTTTTGGTTGACGGTTTTGCCTCTTGACGTGGCAAAGACTTTAATTCAGACAGACCCTGATAAAAACTGTCCAAGAAATCCTTTTCGGGTCTTGCATTCAGTCTACCGAAGGGCTGGATTGAAGGGGTGCTACACGGGTTTGGGTCCTACAATAAGTCGAGCATTTCCAGCTAATGCTGCGACAATTGTCGCATGGGAGCTAGCATTGAAAATGCTAGGCACTAAGCGTGATTGA 921 0.4484 MAAEISSSGYKEYVAGLLAGVAAVATGHPFDTVKVKLQKHNTEAHMIHYRSGLHCTARILKTEGIKGLYRGATSSFIGMAVEGSLFFGIYSQTKLYLQGGVQSGEPRLQVIVPSAAFSGAIISFVLGPTELIKCRMQIQGTDSLVPMSSRYSSPLDCALKTVKTEGVKGIFRGGCATFLRESIGNAVFLSVYENVRYHMHSNIKASSSSYSNLADIGIGIVTGGLGGVAFWLTVLPLDVAKTLIQTDPDKNCPRNPFRVLHSVYRRAGLKGCYTGLGPTISRAFPANAATIVAWELALKMLGTKRD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00817 306 Pfam Mitochondrial carrier protein 10 98 IPR018108 -
Cca01g00817 306 Pfam Mitochondrial carrier protein 114 199 IPR018108 -
Cca01g00817 306 Pfam Mitochondrial carrier protein 220 303 IPR018108 -
Cca01g00817 306 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 133 305 - -
Cca01g00817 306 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 133 - -
Cca01g00817 306 PANTHER - 133 305 - -
Cca01g00817 306 PANTHER - 6 133 - -
Cca01g00817 306 Gene3D Mitochondrial carrier domain 112 306 IPR023395 -
Cca01g00817 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 96 IPR018108 -
Cca01g00817 306 SUPERFAMILY Mitochondrial carrier 10 295 IPR023395 -
Cca01g00817 306 Gene3D Mitochondrial carrier domain 3 111 IPR023395 -
Cca01g00817 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 106 198 IPR018108 -
Cca01g00817 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 214 300 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00817 Cca-Chr1 10990725 10996261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00817 26 301 Antiporters AT1G79900 28.723 1.10e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00817 K15109 - gmx:100815087 516.153