LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g00816	ATGGACAGGTCCGAGGGAAAGAGGGTCTTGAGGTACAAAgaggaggaggaggatgaggatgaagaagaagaggaagagATTGAGATGGGTTTTGGAGAAGATGGAAGGAGGAATAAGAGAGCAATGACAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAAGCTCAATGCCACCTTCTTGTCAAGTGGATAACTGTGATGCTGATCTCAGTGAAGCTAAGCAGTATCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTTCAACAAAGGTTTTGCCAACAATGCAGCAGATTCCATGAGCTATCAGAATTTGATGACACAAAAAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGGCGTCGCAAAAATGCAGCTGACTACCAAGGAGAATGA	429	0.4196	MDRSEGKRVLRYKEEEEDEDEEEEEEIEMGFGEDGRRNKRAMTDLYGKRGSKGGSSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRFHELSEFDDTKRSCRTRLAGHNERRRKNAADYQGE	142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g00816	142	ProSiteProfiles	Zinc finger SBP-type profile.	58	135	IPR004333	GO:0003677
	Cca01g00816	142	PIRSF	SBP	1	142	IPR017238	GO:0003677\|GO:0003700\|GO:0009908
	Cca01g00816	142	MobiDBLite	consensus disorder prediction	15	29	-	-
	Cca01g00816	142	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3	14	135	-	-
	Cca01g00816	142	Gene3D	-	51	122	IPR036893	GO:0003677\|GO:0005634
	Cca01g00816	142	SUPERFAMILY	SBT domain	59	139	IPR036893	GO:0003677\|GO:0005634
	Cca01g00816	142	MobiDBLite	consensus disorder prediction	1	39	-	-
	Cca01g00816	142	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	14	135	IPR044817	GO:0003677
	Cca01g00816	142	Pfam	SBP domain	61	134	IPR004333	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g00816	Cca-Chr1	10969030	10971400	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g00816	54	138	SBP-box Gene Family	AT2G33810	68.235	7.31e-40	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Cca01g00816		SBP	1.4e-33	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g00816	-		-	gmx:100527199	226.483