Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00812 ATGAAGTTTAACATTGCAAACCCCACCACTGGATGCCAGAAGAAGCTGGAAATTGATGACGACCAGAAGCTTCGAGCATTTTGGGACAAGAGGATCTCCCACGAGGTCCTTGGTGATGCCTTGGGTGAGGAGTTTAAAGGCTATGTTTTCAAAATCACTGGTGGGTGTGATAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTCCGACTCTTGCTCCATAGAGCAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGCAGAAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTTGGTAATTGTGAAGAAGGGTGAAAGTGATTTGCCAGGTCTGACCGATGTTGAGAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCCAAAATCCGAAAGCTATTCAACCTTTCCAAGGAGGATGATGTGAGAAAGTATGTCAACACATACCGTCGAACCTTTACAACAAAGGCTGGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGACTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAAGCAGCAGAGTATCAGAAACTCCTTGCTTCCAGATTGAAGGAGCAGAGGGATCACCGGAGTGAGAGCCTGGCCAAGCGGAGATCCAAGCTTTCCAGTGCTACCAAACCAACTGTCACGGCATAG 753 0.4807 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISHEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRAGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDHRSESLAKRRSKLSSATKPTVTA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00812 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 250 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca01g00812 250 MobiDBLite consensus disorder prediction 219 250 - -
Cca01g00812 250 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Cca01g00812 250 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Cca01g00812 250 SMART Ribosomal_S6e_2 1 129 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca01g00812 250 Gene3D - 134 235 - -
Cca01g00812 250 MobiDBLite consensus disorder prediction 219 238 - -
Cca01g00812 250 Pfam Ribosomal protein S6e 1 129 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca01g00812 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 250 - -
Cca01g00812 250 Coils Coil 190 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00812 Cca-Chr1 10870252 10872500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00812 1 250 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.200 3.29e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00812 K02991 - gmx:100786559 440.654