Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00811 ATGGAAAACTTTTATGATCAATTTTTGACATCAAACACTAGCCTATCAACCACTGCCACCAACTTTGCCTCATCCTCATCAAACCCAAGCCTTACACCACCAAACATGGGTCATCCTCAAAATGTTAACTTGGTTGGTAACAATGACCAATTTGCCTATCTTGACCCTTATTCTGGTCCATATGATCAAAACCAACAGTTTCAACATGTGCAATCACTTGCCCAAGTGAATCATCCTCCTTTGTATCCTTTTCAGATGGGGCAAAGTGATGTAGCAACTACCATGTCAAATCTTGTACCTCGAGGTAGGTCACAGTTGAGTGAAGAGGAGAGGGTTAGGAGTAGGCTTGCTAGGGAGAGAAGGAGGCAAGCAAGGCAAAGGAGTAGAAGTGTTGCTCCTATGGCCCCAGTTGAAGGGACAATAAGGGAAAGACCTCACAATGTCAACCAAGGCAGAAATGCCAATATTTTTGTTACTCCAGATGGGATGGTGCTACTAGAGATACTCACCAAGGTGCTAAAGAATAGTGATGTTGGCCCCTTAGGTCGCATTGTGCTCCCAAAAAGAGAGGCTGAGATGTATCTTCCAGAACTACGGGACAGGGAAGGAATTGATGTCGTGCTTAAGGATGTGTATGCTGAGCTGAGATGGACTGTGAAATACAAGTATTGGGTTAATGACCAAAGTAGAATGTATGTGCTTGAAAATACAGGAGATTTTGTGAACCATTATGAATTACAAAGGGATGACTCCATAACCCTTTATGAAGATGAATCTAAAAATCTGTATGTGTTGATAAAAAAAGAGGACAATCAAGAAACATCTCAACACCCAACAAACATGCAAAGGCTGCTCACACTCAGTGCTTACAACAATGGCCTCATTCAAGCATCTCATATGCACCAAGCTCAAGGTGAAGAAGAAAATGCTTCTAATAGCCTTTTGCACCAGTCCAATGCTGGAGCACATTTCGATGTGCAAGGTGAGTTATTGGACAACTTTATAGAAGAGGCACCAACTCAAGAGATGGGAGAAGTCATAATGGCCCCTATGGCTAACCAGATAAACGGTGATCAACAAACCAACTTGGATGATGTCTATGCGAACCTTGACAACATCTTAGAAATTGAGAGAAATTATCGTGGTTTTCACTTTTGA 1158 0.4197 MENFYDQFLTSNTSLSTTATNFASSSSNPSLTPPNMGHPQNVNLVGNNDQFAYLDPYSGPYDQNQQFQHVQSLAQVNHPPLYPFQMGQSDVATTMSNLVPRGRSQLSEEERVRSRLARERRRQARQRSRSVAPMAPVEGTIRERPHNVNQGRNANIFVTPDGMVLLEILTKVLKNSDVGPLGRIVLPKREAEMYLPELRDREGIDVVLKDVYAELRWTVKYKYWVNDQSRMYVLENTGDFVNHYELQRDDSITLYEDESKNLYVLIKKEDNQETSQHPTNMQRLLTLSAYNNGLIQASHMHQAQGEEENASNSLLHQSNAGAHFDVQGELLDNFIEEAPTQEMGEVIMAPMANQINGDQQTNLDDVYANLDNILEIERNYRGFHF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00811 385 ProSiteProfiles B3 DNA-binding domain profile. 169 270 IPR003340 GO:0003677
Cca01g00811 385 SMART B3_2 169 270 IPR003340 GO:0003677
Cca01g00811 385 Pfam B3 DNA binding domain 170 267 IPR003340 GO:0003677
Cca01g00811 385 CDD B3_DNA 168 268 IPR003340 GO:0003677
Cca01g00811 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 10 325 - -
Cca01g00811 385 MobiDBLite consensus disorder prediction 101 133 - -
Cca01g00811 385 Gene3D - 165 279 IPR015300 -
Cca01g00811 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 325 IPR044800 GO:0003700
Cca01g00811 385 SUPERFAMILY DNA-binding pseudobarrel domain 168 267 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00811 Cca-Chr1 10848548 10851588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00811 159 266 B3 DNA Binding Superfamily AT1G28300 56.481 1.76e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca01g00811 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00811 - - ccaj:109803355 685.641